source: liacs/dbdm/dbdm_4/shifts.txt@ 292

Last change on this file since 292 was 62, checked in by Rick van der Zwet, 15 years ago

First results on shifting tests
File size: 41.1 KB
RevLine 
[62]1<Alphabet:['a', 'c', 'g', 't', 'n']>
2Initial HMM DiscreteEmissionHMM(N=2, M=5)
3 state 0 (initial=0.90)
4 Emissions: 0.10, 0.10, 0.10, 0.10, 0.60
5 Transitions: ->0 (0.60), ->1 (0.40)
6 state 1 (initial=0.10)
7 Emissions: 0.20, 0.30, 0.30, 0.20, 0.10
8 Transitions: ->0 (0.30), ->1 (0.70)
9
10Observation sequence : nngaagtgactttggngagc
11Observations : nngaagtgactttggngagc
12 thrL, 190, 273, atg, tga, >, True, True
13 thrA, 354, 2816, atg, tga, >, True, True
14 thrB, 2818, 3750, atg, taa, >, True, True
15 thrC, 3751, 5037, atg, taa, >, True, True
16 Z0005, 5251, 5547, gtg, taa, >, True, True
17 yaaA, 5700, 6476, atg, taa, <, True, True
18 yaaJ, 6546, 7976, atg, taa, <, True, True
19 talB, 8255, 9208, atg, taa, >, True, True
20 mog, 9323, 9910, atg, taa, >, True, True
21 yaaH, 9945, 10511, atg, taa, <, True, True
22 Z0011, 10660, 11373, atg, tga, <, True, True
23 htgA, 10742, 11362, ctg, taa, >, False, True
24 yaaI, 11399, 11803, atg, taa, <, True, True
25 dnaK, 12180, 14096, atg, taa, >, True, True
26 dnaJ, 14185, 15315, atg, taa, >, True, True
27 gef, 15419, 15628, tgc, taa, <, False, True
28# Start codon reading frame match - shift -10: 15615, atg: True
29# Start codon reading frame match - shift 1: 15626, atg: True
30 nhaA, 16157, 17323, agt, ttg, >, False, False
31# Start codon reading frame match - shift 1: 16157, gtg: True
32# Stop codon reading frame match - shift 1: 17321, tga: True
33# Matching shift 1
34 nhaA, 16157, 17323, gtg, tga, >, True, True
35 nhaR, 17383, 18288, atg, taa, >, True, True
36 Z0020, 18326, 18949, atg, taa, <, True, True
37 Z0021, 18960, 19286, atg, taa, <, True, True
38 Z0022, 19299, 21749, atg, taa, <, True, True
39 Z0023, 21762, 22445, gtg, taa, <, True, True
40 Z0024, 22495, 23028, atg, taa, <, True, True
41 Z0025, 23330, 24751, atg, taa, <, True, True
42 rpsT, 25221, 25484, ttg, taa, <, False, True
43 Z0028, 25587, 25811, atg, tga, >, True, True
44 ribF, 25819, 26760, atg, taa, >, True, True
45 ileS, 26803, 29619, atg, ctg, >, True, False
46# Stop codon reading frame match - shift -9: 29608, taa: True
47# Stop codon reading frame match - shift 1: 29618, tga: True
48# Stop codon reading frame match - shift 4: 29621, tga: True
49 lspA, 29619, 30113, gat, ata, >, False, False
50# Start codon reading frame match - shift 1: 29620, atg: True
51# Stop codon reading frame match - shift 1: 30112, taa: True
52# Stop codon reading frame match - shift 4: 30115, taa: True
53 slpA, 30201, 30650, cat, gta, >, False, False
54# Start codon reading frame match - shift 1: 30202, atg: True
55# Stop codon reading frame match - shift 1: 30649, taa: True
56# Matching shift 1
57 slpA, 30201, 30650, atg, taa, >, True, True
58 lytB, 30652, 31602, atg, taa, >, True, True
59 yaaF, 31668, 32582, atg, taa, >, True, True
60 dapB, 32749, 33570, atg, taa, >, True, True
61 carA, 34026, 35174, ttg, taa, >, False, True
62# Start codon reading frame match - shift -5: 34022, gtg: True
63 carB, 35192, 38413, atg, taa, >, True, True
64 Z0039, 38421, 38639, atg, tga, <, True, True
65 Z0040, 38569, 39069, gtg, taa, >, True, True
66 caiE, 39188, 39799, gtg, tga, <, True, True
67 caiD, 39784, 40677, atg, taa, <, True, True
68 caiC, 40678, 42246, atg, taa, <, True, True
69 caiB, 42305, 43522, atg, taa, <, True, True
70 caiA, 43651, 44793, atg, taa, <, True, True
71 caiT, 44824, 46338, aag, taa, <, False, True
72# Start codon reading frame match - shift -4: 46333, atg: True
73# Start codon reading frame match - shift 3: 46340, atg: True
74 fixA, 46781, 47587, gat, att, >, False, False
75# Start codon reading frame match - shift 3: 46785, atg: True
76# Stop codon reading frame match - shift 3: 47589, taa: True
77# Matching shift 3
78 fixA, 46781, 47587, atg, taa, >, True, True
79 fixB, 47602, 48543, atg, tga, >, True, True
80 fixC, 48594, 49880, atg, atg, >, True, False
81# Stop codon reading frame match - shift -10: 49872, tga: True
82# Stop codon reading frame match - shift 1: 49883, tga: True
83 fixX, 49877, 50164, tat, ctg, >, False, False
84# Start codon reading frame match - shift -10: 49871, gtg: True
85# Start codon reading frame match - shift 1: 49882, atg: True
86# Stop codon reading frame match - shift 1: 50167, tga: True
87# Matching shift 1
88 fixX, 49877, 50164, atg, tga, >, True, True
89 yaaU, 50222, 51553, atg, taa, >, True, True
90 yabF, 51661, 52191, atg, tag, >, True, True
91 kefC, 52184, 54046, atg, cta, >, True, False
92# Stop codon reading frame match - shift 1: 54050, taa: True
93# Stop codon reading frame match - shift 4: 54053, taa: True
94 Z0055, 54238, 54717, aat, gta, >, False, False
95# Start codon reading frame match - shift 1: 54244, atg: True
96# Stop codon reading frame match - shift 1: 54721, taa: True
97# Matching shift 1
98 Z0055, 54238, 54717, atg, taa, >, True, True
99 Z0056, 54803, 55036, atg, tag, >, True, True
100 Z0057, 55039, 55353, atg, taa, >, True, True
101 apaH, 55350, 56198, atg, taa, <, True, True
102 apaG, 56205, 56582, atg, taa, <, True, True
103 ksgA, 56585, 57406, atg, taa, <, True, True
104 pdxA, 57403, 58392, atg, tga, <, True, True
105 surA, 58392, 59678, atg, taa, <, True, True
106 imp, 59731, 62085, atg, tga, <, True, True
107 yabH, 62340, 63155, atg, tga, >, True, True
108 Z0065, 63450, 64202, atg, tga, >, True, True
109 yabO, 64620, 65279, tgg, aac, <, False, False
110# Start codon reading frame match - shift -5: 65278, atg: True
111# Start codon reading frame match - shift 1: 65284, atg: True
112# Stop codon reading frame match - shift 1: 64627, taa: True
113# Matching shift 1
114 yabO, 64620, 65279, atg, taa, <, True, True
115 Z0067, 65291, 68197, atg, taa, <, True, True
116 polB, 68361, 70712, gtg, tga, <, True, True
117 araD, 70787, 71482, atg, taa, <, True, True
118 araA, 71682, 73184, atg, taa, <, True, True
119 araB, 73195, 74895, atg, taa, <, True, True
120 araC, 75234, 76112, atg, taa, >, True, True
121 yabI, 76198, 76962, atg, tag, >, True, True
122 yabJ, 77049, 77747, atg, taa, <, True, True
123 yabK, 77731, 79341, atg, tga, <, True, True
124 tbpA, 79317, 80300, gtg, taa, <, True, True
125 Z0078, 80672, 81241, atg, tga, >, True, True
126 yabN, 81470, 83128, atg, tag, <, True, True
127 leuD, 83456, 84061, atg, tag, <, True, True
128 leuC, 84072, 85472, atg, taa, <, True, True
129 leuB, 85475, 86569, gtg, taa, <, True, True
130 leuA, 86566, 88137, atg, tga, <, True, True
131 leuL, 88230, 88316, atg, taa, <, True, True
132 leuO, 88956, 89918, gtg, taa, >, True, True
133 ilvI, 90152, 91960, atg, tga, >, True, True
134 ilvH, 91963, 92454, atg, tga, >, True, True
135 fruL, 92466, 92552, atg, taa, >, True, True
136 fruR, 92634, 93638, gtg, taa, >, True, True
137 yabB, 94240, 94698, atg, taa, >, True, True
138 yabC, 94700, 95641, atg, tga, >, True, True
139 ftsL, 95638, 96003, atg, taa, >, True, True
140 ftsI, 96019, 97785, atg, taa, >, True, True
141 murE, 97772, 99259, gtg, cat, >, True, False
142# Stop codon reading frame match - shift -6: 99258, tga: True
143# Stop codon reading frame match - shift 2: 99266, tga: True
144# Stop codon reading frame match - shift 6: 99270, tag: True
145 murF, 99256, 100614, gca, gtt, >, False, False
146# Start codon reading frame match - shift -6: 99257, gtg: True
147# Start codon reading frame match - shift 2: 99265, atg: True
148# Stop codon reading frame match - shift 2: 100621, tag: True
149# Matching shift 2
150 murF, 99256, 100614, atg, tag, >, True, True
151 mraY, 100608, 101690, atg, taa, >, True, True
152 murD, 101693, 103009, atg, tga, >, True, True
153 ftsW, 103009, 104253, atg, tga, >, True, True
154 murG, 104250, 105317, atg, taa, >, True, True
155 murC, 105371, 106846, atg, ctg, >, True, False
156# Stop codon reading frame match - shift -3: 106850, tga: True
157# Stop codon reading frame match - shift 1: 106854, tga: True
158# Stop codon reading frame match - shift 4: 106857, taa: True
159 ddlB, 106839, 107759, cat, cta, >, False, False
160# Start codon reading frame match - shift 1: 106849, atg: True
161# Stop codon reading frame match - shift 1: 107767, taa: True
162# Matching shift 1
163 ddlB, 106839, 107759, atg, taa, >, True, True
164 ftsQ, 107761, 108591, atg, tga, >, True, True
165 ftsA, 108588, 109850, atg, taa, >, True, True
166 ftsZ, 109911, 111062, atg, taa, >, True, True
167 lpxC, 111163, 112080, atg, taa, >, True, True
168 yacA, 112236, 112823, gtg, taa, >, True, True
169 secA, 112885, 115590, atg, taa, >, True, True
170 mutT, 115650, 116048, atg, taa, >, True, True
171 Z0110, 116054, 116188, gtg, tga, <, True, True
172 yacG, 116139, 116336, atg, tga, <, True, True
173 yacF, 116346, 117089, atg, taa, <, True, True
174 yacE, 117089, 117709, atg, taa, <, True, True
175 guaC, 117934, 118977, atg, taa, >, True, True
176 Z0115, 118897, 119004, gtg, tga, <, True, True
177 hofC, 119012, 120214, atg, taa, <, True, True
178 hofB, 120204, 121589, atg, taa, <, True, True
179 ppdD, 121599, 122039, atg, taa, <, True, True
180 nadC, 122242, 123135, atg, tag, <, True, True
181 ampD, 123223, 123774, atg, tga, >, True, True
182 ampE, 123771, 124625, atg, taa, >, True, True
183 aroP, 124668, 126041, atg, taa, <, True, True
184 pdhR, 126582, 127346, atg, tag, >, True, True
185 aceE, 127507, 130170, atg, taa, >, True, True
186 aceF, 130185, 132077, atg, taa, >, True, True
187 lpdA, 132285, 133709, atg, taa, >, True, True
188 yacH, 133780, 135633, atg, taa, <, True, True
189 acnB, 135988, 138585, gtg, taa, >, True, True
190 yacL, 138713, 139123, atg, taa, >, True, True
191 speD, 139161, 139955, ttg, taa, <, False, True
192 speE, 139971, 140837, atg, taa, <, True, True
193 yacC, 140943, 141413, ttg, taa, <, False, True
194 yacK, 141456, 143006, atg, taa, >, True, True
195 gcd, 143208, 145598, atg, taa, <, True, True
196 hpt, 145792, 146340, atg, taa, >, True, True
197 yadF, 146381, 147043, atg, taa, <, True, True
198 yadG, 147152, 148078, atg, tga, >, True, True
199 yadH, 148075, 148845, atg, taa, >, True, True
200 yadI, 148950, 149390, atg, tta, >, True, False
201# Stop codon reading frame match - shift -6: 149392, tga: True
202# Stop codon reading frame match - shift 1: 149399, taa: True
203 yadE, 149454, 150683, cat, ata, >, False, False
204# Start codon reading frame match - shift -10: 149454, gtg: True
205# Start codon reading frame match - shift 1: 149465, atg: True
206# Stop codon reading frame match - shift 1: 150692, taa: True
207# Matching shift 1
208 yadE, 149454, 150683, atg, taa, >, True, True
209 panD, 150687, 151067, atg, tga, <, True, True
210 yadD, 151341, 152237, atg, taa, >, True, True
211 panC, 152536, 153387, gtg, taa, <, True, True
212 panB, 153399, 154193, atg, taa, <, True, True
213 yadC, 154328, 155437, atg, taa, <, True, True
214 yadK, 155449, 156039, atg, taa, <, True, True
215 yadL, 156060, 156665, atg, taa, <, True, True
216 yadM, 156680, 157240, atg, taa, <, True, True
217 htrE, 157242, 159740, tgg, taa, <, False, True
218# Start codon reading frame match - shift -6: 159743, atg: True
219# Start codon reading frame match - shift 1: 159750, gtg: True
220 ecpD, 159884, 160615, tgc, aaa, <, False, False
221# Start codon reading frame match - shift -5: 160619, atg: True
222# Start codon reading frame match - shift 1: 160625, gtg: True
223# Stop codon reading frame match - shift -6: 159889, taa: True
224# Stop codon reading frame match - shift 1: 159896, taa: True
225# Matching shift 1
226 ecpD, 159884, 160615, gtg, taa, <, True, True
227 yadN, 160696, 161301, atg, taa, <, True, True
228 folK, 161573, 162055, atg, tag, <, True, True
229 pcnB, 162052, 163416, gct, tga, <, False, True
230# Start codon reading frame match - shift 2: 163428, gtg: True
231 yadB, 163509, 164435, gct, agc, <, False, False
232# Start codon reading frame match - shift 2: 164447, atg: True
233# Stop codon reading frame match - shift -9: 163512, tag: True
234# Stop codon reading frame match - shift -5: 163516, tga: True
235# Stop codon reading frame match - shift 2: 163523, tga: True
236# Matching shift 2
237 yadB, 163509, 164435, atg, tga, <, True, True
238 dksA, 164472, 164927, atg, taa, <, True, True
239 sfsA, 165105, 165809, atg, tag, <, True, True
240 yadP, 165824, 166363, gtg, taa, <, True, True
241 hrpB, 166383, 168857, atg, taa, >, True, True
242 mrcB, 169053, 171587, atg, taa, >, True, True
243 fhuA, 171807, 174050, atg, taa, >, True, True
244 fhuC, 174101, 174898, atg, tga, >, True, True
245 fhuD, 174898, 175788, atg, tga, >, True, True
246 fhuB, 175785, 177767, gtg, taa, >, True, True
247 hemL, 177802, 179082, atg, tga, <, True, True
248 yadQ, 179307, 180728, atg, ttg, >, True, False
249# Stop codon reading frame match - shift 1: 180741, tga: True
250 yadR, 180810, 181154, tat, cta, >, False, False
251# Start codon reading frame match - shift 1: 180825, atg: True
252# Start codon reading frame match - shift 5: 180829, gtg: True
253# Start codon reading frame match - shift 8: 180832, atg: True
254# Stop codon reading frame match - shift -6: 181160, tag: True
255# Stop codon reading frame match - shift 1: 181167, taa: True
256 yadS, 181201, 181824, tgc, gaa, <, False, False
257# Start codon reading frame match - shift 1: 181837, atg: True
258# Stop codon reading frame match - shift 1: 181216, tga: True
259# Matching shift 1
260 yadS, 181201, 181824, atg, tga, <, True, True
261 yadT, 181862, 182662, atg, tag, <, True, True
262 pfs, 182655, 183353, atg, taa, <, True, True
263 dgt, 183437, 184954, atg, taa, >, True, True
264 htrA, 185084, 186508, atg, taa, >, True, True
265 yaeG, 186645, 187820, gtg, tag, >, True, True
266 yaeH, 187909, 188295, atg, taa, <, True, True
267 dapD, 188610, 189434, atg, taa, <, True, True
268 glnD, 189465, 192137, atg, tga, <, True, True
269 map, 192199, 192993, atg, taa, <, True, True
270 rpsB, 193361, 194086, atg, taa, >, True, True
271 tsf, 194344, 195195, atg, taa, >, True, True
272 pyrH, 195342, 196067, atg, taa, >, True, True
273 frr, 196217, 196774, gtg, tga, >, True, True
274 yaeM, 196866, 198062, atg, tga, >, True, True
275 yaeS, 198248, 199009, gtg, tga, >, True, True
276 cdsA, 199130, 199879, atg, taa, >, True, True
277 yaeL, 199891, 201243, atg, tga, >, True, True
278 yaeT, 201273, 203705, atg, taa, >, True, True
279 hlpA, 203826, 204311, gtg, taa, >, True, True
280 lpxD, 204315, 205340, atg, taa, >, True, True
281 fabZ, 205445, 205900, ttg, tga, >, False, True
282 lpxA, 205904, 206692, gtg, taa, >, True, True
283 lpxB, 206692, 207840, atg, tga, >, True, True
284 rnhB, 207837, 208433, atg, tga, >, True, True
285 dnaE, 208470, 211952, atg, taa, >, True, True
286 accA, 211965, 212924, atg, taa, >, True, True
287 ldcC, 213023, 215164, atg, taa, >, True, True
288 yaeR, 215194, 215610, gtg, taa, >, True, True
289 mesJ, 215675, 216970, atg, tag, >, True, True
290 yaeO, 217023, 217283, atg, tga, <, True, True
291 Z0202, 217636, 218094, atg, tag, >, True, True
292 yaeJ, 218178, 218588, atg, taa, >, True, True
293 cutF, 218602, 219312, atg, taa, >, True, True
294 yaeF, 219512, 220336, atg, tga, <, True, True
295 proS, 220389, 222107, atg, tga, <, True, True
296 Z0207, 222218, 222925, atg, taa, <, True, True
297 rcsF, 222922, 223326, atg, tga, <, True, True
298 yaeC, 223444, 224259, atg, taa, <, True, True
299 yaeE, 224299, 224952, atg, taa, <, True, True
300 abc, 224945, 225976, atg, tga, <, True, True
301 yaeD, 226164, 226739, gtg, tga, >, True, True
302 rrsH, 227103, 228644, aaa, tta, >, False, False
303# Stop codon reading frame match - shift 6: 228663, taa: True
304 ileV, 228713, 228789, agg, cca, >, False, False
305 alaV, 228832, 228907, ggg, cca, >, False, False
306# Start codon reading frame match - shift -7: 228840, atg: True
307# Start codon reading frame match - shift -2: 228845, atg: True
308# Stop codon reading frame match - shift -8: 228912, tag: True
309# Stop codon reading frame match - shift 9: 228929, tag: True
310 rrlH, 229091, 231993, ggt, cct, >, False, False
311# Start codon reading frame match - shift -4: 229102, gtg: True
312# Stop codon reading frame match - shift -10: 231996, tga: True
313# Stop codon reading frame match - shift -3: 232003, taa: True
314 rrfH, 232086, 232205, ttg, gca, >, False, False
315# Stop codon reading frame match - shift 9: 232227, taa: True
316 aspU, 232258, 232334, tgg, gcc, >, False, False
317# Start codon reading frame match - shift -1: 232272, gtg: True
318# Stop codon reading frame match - shift 9: 232356, taa: True
319 yafB, 232497, 233300, tat, tta, >, False, False
320# Start codon reading frame match - shift 1: 232513, atg: True
321# Stop codon reading frame match - shift -9: 233304, tga: True
322# Stop codon reading frame match - shift 1: 233314, taa: True
323# Matching shift 1
324 yafB, 232497, 233300, atg, taa, >, True, True
325 yafC, 233297, 234211, atg, taa, <, True, True
326 yafD, 234452, 235252, gtg, taa, >, True, True
327 Z0233, 235330, 236100, atg, taa, >, True, True
328 dniR, 236148, 237506, atg, tga, <, True, True
329 gloB, 237578, 238333, atg, tga, <, True, True
330 yafS, 238349, 239089, gtg, taa, >, True, True
331 rnhA, 239086, 239553, atg, taa, <, True, True
332 dnaQ, 239618, 240349, atg, taa, >, True, True
333 aspV, 240482, 240558, gga, cca, >, False, False
334 Z0243, 240887, 241687, atg, taa, >, True, True
335 Z0244, 241872, 242168, atg, taa, <, True, True
336 Z0245, 242165, 242620, atg, tga, <, True, True
337 Z0246, 242617, 243213, atg, tga, <, True, True
338 Z0247, 243292, 243513, atg, taa, <, True, True
339 Z0248, 243534, 244013, atg, taa, <, True, True
340 Z0249, 243979, 245478, tgt, tga, <, False, True
341# Start codon reading frame match - shift -1: 245491, gtg: True
342# Start codon reading frame match - shift 1: 245493, gtg: True
343 Z0250, 245399, 248833, tgc, gag, <, False, False
344# Stop codon reading frame match - shift 1: 245416, tga: True
345 Z0251, 248970, 249764, tga, aaa, <, False, False
346# Start codon reading frame match - shift 1: 249779, gtg: True
347# Stop codon reading frame match - shift 1: 248987, taa: True
348# Matching shift 1
349 Z0251, 248970, 249764, gtg, taa, <, True, True
350 Z0252, 249761, 250381, atg, tga, <, True, True
351 Z0253, 250386, 251129, atg, taa, <, True, True
352 Z0254, 251126, 253897, atg, tga, <, True, True
353 Z0255, 253906, 254667, atg, taa, <, True, True
354 Z0256, 254672, 256003, atg, taa, <, True, True
355 Z0257, 256006, 256530, atg, taa, <, True, True
356 Z0258, 256527, 257828, atg, tga, <, True, True
357 Z0259, 257832, 258914, atg, taa, <, True, True
358 Z0260, 258878, 260728, tgg, tga, <, False, True
359# Start codon reading frame match - shift 1: 260744, atg: True
360 Z0261, 260732, 261145, tga, gac, <, False, False
361# Start codon reading frame match - shift 1: 261161, atg: True
362# Stop codon reading frame match - shift 1: 260750, tga: True
363# Matching shift 1
364 Z0261, 260732, 261145, atg, tga, <, True, True
365 Z0262, 261236, 262627, atg, tag, <, True, True
366 Z0263, 262678, 262902, atg, tga, <, True, True
367 Z0264, 262937, 263437, atg, taa, <, True, True
368 Z0265, 263864, 264007, atg, tag, >, True, True
369 Z0266, 264134, 264652, atg, taa, >, True, True
370 Z0267, 264862, 267003, atg, tga, >, True, True
371 Z0268, 267079, 271293, atg, tag, >, True, True
372 Z0269, 271296, 271907, atg, tag, >, True, True
373 Z0271, 272653, 273789, atg, taa, >, True, True
374 Z0272, 273792, 275552, ttg, tag, >, False, True
375 Z0273, 275640, 275777, gtg, taa, <, True, True
376 Z0274, 275754, 276017, atg, taa, >, True, True
377 Z0275, 276198, 277370, gtg, taa, >, True, True
378 yafV, 277488, 278258, gtg, tga, <, True, True
379 ykfE, 278412, 278885, atg, taa, >, True, True
380 yafH, 278928, 281408, gtg, taa, <, True, True
381 gmhA, 281612, 282190, atg, taa, >, True, True
382 yafJ, 282295, 283062, atg, tga, >, True, True
383 yafK, 283033, 283773, atg, taa, <, True, True
384 Z0284, 283929, 284132, atg, taa, <, True, True
385 dinJ, 284208, 284468, atg, taa, <, True, True
386 yafL, 284678, 285427, atg, tag, >, True, True
387 yafM, 285603, 285899, atg, tag, >, True, True
388 fhiA, 286245, 287984, atg, tga, <, True, True
389 mbhA, 287929, 288714, gtg, taa, >, True, True
390 dinP, 288785, 289840, atg, tga, >, True, True
391 yafN, 289892, 290185, atg, taa, >, True, True
392 yafO, 290188, 290586, atg, tga, >, True, True
393 yafP, 290596, 291048, atg, taa, >, True, True
394 Z0296, 291355, 291621, atg, tga, >, True, True
395 prfH, 291590, 292090, gtg, taa, >, True, True
396 pepD, 292147, 293604, tgt, taa, <, False, True
397# Start codon reading frame match - shift 1: 293621, gtg: True
398 gpt, 293865, 294323, cat, cta, >, False, False
399# Start codon reading frame match - shift 1: 293884, atg: True
400# Stop codon reading frame match - shift 1: 294340, taa: True
401# Matching shift 1
402 gpt, 293865, 294323, atg, taa, >, True, True
403 yafA, 294415, 295659, atg, tta, >, True, False
404# Stop codon reading frame match - shift 1: 295677, taa: True
405 crl, 295717, 296118, aat, gtg, >, False, False
406# Start codon reading frame match - shift 1: 295737, atg: True
407# Stop codon reading frame match - shift -7: 296128, taa: True
408# Stop codon reading frame match - shift 1: 296136, tga: True
409# Stop codon reading frame match - shift 5: 296140, tga: True
410 phoE, 296157, 297212, tga, aat, <, False, False
411# Start codon reading frame match - shift 1: 297230, atg: True
412# Start codon reading frame match - shift 7: 297236, atg: True
413# Stop codon reading frame match - shift -2: 296174, tga: True
414# Stop codon reading frame match - shift 1: 296177, taa: True
415 proB, 297500, 298603, cat, tta, >, False, False
416# Start codon reading frame match - shift 1: 297520, atg: True
417# Start codon reading frame match - shift 5: 297524, gtg: True
418# Stop codon reading frame match - shift -10: 298610, tga: True
419# Stop codon reading frame match - shift 1: 298621, taa: True
420 proA, 298615, 299868, gat, gta, >, False, False
421# Start codon reading frame match - shift 1: 298635, atg: True
422# Stop codon reading frame match - shift 1: 299886, taa: True
423# Stop codon reading frame match - shift 5: 299890, taa: True
424 thrW, 299983, 300058, ggc, acc, >, False, False
425# Stop codon reading frame match - shift 6: 300081, taa: True
426 intH, 300073, 301047, tgc, aac, <, False, False
427# Start codon reading frame match - shift 1: 301065, atg: True
428# Start codon reading frame match - shift 5: 301069, atg: True
429# Stop codon reading frame match - shift -7: 300085, tga: True
430# Stop codon reading frame match - shift 1: 300093, taa: True
431# Stop codon reading frame match - shift 8: 300100, tga: True
432 Z0308, 301423, 301812, tga, aaa, <, False, False
433# Start codon reading frame match - shift 1: 301830, atg: True
434# Stop codon reading frame match - shift 1: 301443, taa: True
435# Matching shift 1
436 Z0308, 301423, 301812, atg, taa, <, True, True
437 Z0309, 301940, 302653, atg, tga, <, True, True
438 Z0310, 303073, 303366, atg, tga, >, True, True
439 Z0311, 303399, 304007, atg, tga, >, True, True
440 Z0312, 303947, 304321, gtg, tga, >, True, True
441 Z0313, 304318, 304629, atg, tga, >, True, True
442 Z0314, 304629, 305339, atg, taa, >, True, True
443 Z0315, 305351, 305803, gtg, tga, >, True, True
444 Z0316, 305775, 306368, atg, tag, <, True, True
445 Z0317, 306368, 306865, atg, taa, <, True, True
446 pinH, 306856, 307446, atg, tga, >, True, True
447 Z0319, 307504, 308277, atg, tga, <, True, True
448 Z0321, 309101, 309844, atg, tga, >, True, True
449 Z0322, 309886, 310251, gtg, taa, <, True, True
450 Z0324, 310756, 311988, atg, taa, >, True, True
451 Z0325, 311992, 312408, gtg, taa, >, True, True
452 Z0326, 312381, 312998, atg, taa, >, True, True
453 Z0327, 312998, 313456, atg, tga, >, True, True
454 Z0328, 313449, 314081, atg, taa, >, True, True
455 Z0330, 314112, 314702, ttg, taa, >, False, True
456# Start codon reading frame match - shift -8: 314124, atg: True
457 Z0331, 314702, 315268, atg, taa, >, True, True
458 Z0332, 315678, 315950, atg, tga, <, True, True
459 psuI, 315956, 316507, atg, taa, <, True, True
460 sidI, 316504, 317256, atg, tga, <, True, True
461 Z0335, 317659, 317829, atg, taa, >, True, True
462 Z0336, 318190, 318450, atg, tga, >, True, True
463 Z0337, 318447, 319004, atg, tga, >, True, True
464 Z0338, 319222, 319545, atg, taa, >, True, True
465 Z0339, 319502, 321892, atg, taa, >, True, True
466 Z0340, 322025, 322981, gtg, taa, <, True, True
467 Z0341, 323074, 323112, atg, taa, <, True, True
468 Z0342, 323657, 324556, atg, taa, <, True, True
469 Z0343, 324655, 325377, atg, tga, >, True, True
470 Z0344, 325544, 325822, atg, taa, >, True, True
471 Z0345, 326097, 326246, atg, taa, >, True, True
472 Z0346, 326525, 327409, atg, tga, <, True, True
473 Z0347, 327673, 328731, atg, taa, >, True, True
474 Z0348, 328807, 330000, atg, tag, >, True, True
475 yagQ, 330179, 331135, atg, tga, <, True, True
476 yagR, 331145, 333343, atg, taa, <, True, True
477 yagS, 333340, 334296, atg, tga, <, True, True
478 yagT, 334293, 334982, atg, tga, <, True, True
479 yagU, 335400, 336014, atg, taa, >, True, True
480 ykgJ, 336262, 336591, atg, taa, <, True, True
481 yagV, 336904, 337659, atg, tga, <, True, True
482 yagW, 337583, 339226, atg, taa, <, True, True
483 yagX, 339216, 341741, atg, taa, <, True, True
484 yagY, 341767, 342435, atg, tag, <, True, True
485 yagZ, 342493, 343080, atg, taa, <, True, True
486 ykgK, 343155, 343745, gtg, taa, <, True, True
487 Z0362, 344151, 344375, atg, tga, <, True, True
488 ykgL, 344522, 344713, atg, taa, >, True, True
489 ykgM, 344923, 345186, atg, tga, <, True, True
490 Z0365, 345429, 345830, gtg, tga, >, True, True
491 Z0366, 345827, 346174, atg, taa, >, True, True
492 Z0367, 346224, 347762, atg, taa, >, True, True
493 Z0369, 348575, 349717, atg, taa, <, True, True
494 Z0370, 349953, 350873, atg, taa, <, True, True
495 Z0371, 350967, 351956, atg, tga, >, True, True
496 Z0372, 352244, 352600, atg, taa, <, True, True
497 Z0373, 352631, 352759, atg, tga, >, True, True
498 Z0374, 352793, 353368, atg, taa, <, True, True
499 eaeH, 353934, 358187, atg, taa, >, True, True
500 ykgA, 358308, 359198, gtg, tag, <, True, True
501 Z0377, 359399, 360283, atg, tga, >, True, True
502 ykgB, 360443, 361036, atg, tga, <, True, True
503 Z0379, 361019, 361288, gtg, taa, >, True, True
504 ykgI, 361048, 361299, ttg, taa, <, False, True
505# Start codon reading frame match - shift -3: 361314, atg: True
506 ykgC, 361393, 362745, atg, taa, <, True, True
507 ykgD, 362944, 363798, atg, tga, >, True, True
508 ykgE, 364325, 365044, gtg, tga, >, True, True
509 ykgF, 365055, 366482, atg, taa, >, True, True
510 ykgG, 366322, 367170, gtg, tga, >, True, True
511 Z0387, 367125, 367337, atg, tga, <, True, True
512 Z0388, 367665, 368081, atg, taa, <, True, True
513 Z0389, 368263, 368505, gtg, taa, <, True, True
514 Z0390, 368429, 369538, atg, tga, <, True, True
515 Z0391, 369565, 370326, atg, taa, <, True, True
516 Z0392, 370480, 370956, atg, tga, <, True, True
517 Z0393, 371156, 371311, atg, tga, <, True, True
518 Z0394, 371604, 371762, atg, taa, <, True, True
519 Z0395, 371783, 372166, atg, tag, <, True, True
520 Z0397, 372972, 373223, atg, tga, >, True, True
521 betA, 373225, 374913, ttg, tga, <, False, True
522 betB, 374927, 376399, atg, taa, <, True, True
523 betI, 376413, 377000, atg, taa, <, True, True
524 betT, 377129, 379162, atg, tga, >, True, True
525 Z0402, 379670, 383719, atg, tga, >, True, True
526 yahA, 383852, 384949, gtg, tga, >, True, True
527 Z0404, 384991, 385251, gtg, taa, <, True, True
528 Z0405, 385212, 385922, atg, tag, <, True, True
529 Z0406, 386014, 386316, atg, taa, <, True, True
530 yahD, 386779, 387384, atg, taa, >, True, True
531 yahE, 387424, 388287, gtg, taa, >, True, True
532 yahF, 388277, 389824, atg, tga, >, True, True
533 yahG, 389824, 391242, atg, tga, >, True, True
534 yahI, 391757, 392707, atg, taa, >, True, True
535 yahJ, 392717, 394099, atg, tga, >, True, True
536 Z0414, 394398, 394808, atg, tag, >, True, True
537 Z0415, 395059, 396045, atg, taa, >, True, True
538 Z0416, 396094, 396354, atg, tag, >, True, True
539 Z0417, 396400, 397578, gtg, tga, >, True, True
540 Z0418, 397571, 398542, atg, tga, >, True, True
541 Z0419, 398539, 399495, atg, taa, >, True, True
542 yahK, 399582, 400631, atg, tga, >, True, True
543 yahL, 400874, 401689, atg, tag, >, True, True
544 Z0422, 402035, 402115, ccg, cca, >, False, False
545 Z0423, 402210, 402350, atg, tag, >, True, True
546 yahN, 402367, 403038, atg, tga, <, True, True
547 yahO, 403185, 403460, atg, taa, >, True, True
548 prpR, 403558, 405144, atg, tga, <, True, True
549 prpB, 405383, 406273, atg, taa, >, True, True
550 prpC, 406429, 407598, atg, taa, >, True, True
551 prpD, 407632, 409083, atg, taa, >, True, True
552 prpE, 409123, 411009, atg, taa, >, True, True
553 Z0431, 411372, 411509, tgc, agg, <, False, False
554# Start codon reading frame match - shift -4: 411523, gtg: True
555# Start codon reading frame match - shift 1: 411528, atg: True
556# Start codon reading frame match - shift 8: 411535, gtg: True
557# Stop codon reading frame match - shift -8: 411384, taa: True
558# Stop codon reading frame match - shift -5: 411387, tga: True
559# Stop codon reading frame match - shift 1: 411393, tag: True
560 codB, 411903, 413162, cgt, ata, >, False, False
561# Start codon reading frame match - shift 1: 411924, gtg: True
562# Stop codon reading frame match - shift 1: 413181, taa: True
563# Matching shift 1
564 codB, 411903, 413162, gtg, taa, >, True, True
565 codA, 413152, 414435, gtg, tga, >, True, True
566 cynR, 414568, 415467, atg, taa, <, True, True
567 cynT, 415577, 416236, gtg, taa, >, True, True
568 cynS, 416267, 416737, atg, tga, >, True, True
569 cynX, 416770, 417924, atg, tga, >, True, True
570 lacA, 418027, 418638, atg, taa, <, True, True
571 lacY, 418704, 419957, atg, taa, <, True, True
572 lacZ, 420009, 423083, atg, taa, <, True, True
573 lacI, 423206, 424288, acc, gag, <, False, False
574# Start codon reading frame match - shift 5: 424312, gtg: True
575# Start codon reading frame match - shift 7: 424314, atg: True
576# Stop codon reading frame match - shift 1: 423228, tga: True
577 Z0442, 424325, 425278, ccc, gcg, <, False, False
578# Start codon reading frame match - shift 5: 425302, atg: True
579# Start codon reading frame match - shift 10: 425307, gtg: True
580# Stop codon reading frame match - shift 2: 424348, tag: True
581# Stop codon reading frame match - shift 5: 424351, tga: True
582 Z0443, 425298, 426074, aat, cgg, <, False, False
583# Start codon reading frame match - shift 5: 426098, atg: True
584# Stop codon reading frame match - shift -6: 425313, taa: True
585# Stop codon reading frame match - shift 5: 425324, taa: True
586# Matching shift 5
587 Z0443, 425298, 426074, atg, taa, <, True, True
588 mhpR, 426189, 427061, gtg, tag, <, True, True
589 mhpA, 427213, 428877, atg, tga, >, True, True
590 mhpB, 428879, 429823, atg, tga, >, True, True
591 mhpC, 429778, 430707, gtg, taa, >, True, True
592 mhpD, 430717, 431526, atg, tga, >, True, True
593 mhpF, 431523, 432473, atg, tga, >, True, True
594 mhpE, 432470, 433483, atg, taa, >, True, True
595 mhpT, 433614, 434870, atg, tga, >, True, True
596 yaiL, 434855, 435511, gtg, taa, >, True, True
597 yaiM, 435636, 436469, atg, tga, <, True, True
598 adhC, 436562, 437671, atg, tga, <, True, True
599 yaiN, 437706, 438002, gtg, tag, <, True, True
600 afuC, 438141, 439199, gga, taa, <, False, True
601# Start codon reading frame match - shift -10: 439213, atg: True
602# Start codon reading frame match - shift 2: 439225, atg: True
603 afuB, 439199, 441277, gtc, atg, <, False, False
604# Start codon reading frame match - shift 2: 441303, atg: True
605# Stop codon reading frame match - shift 2: 439227, taa: True
606# Matching shift 2
607 afuB, 439199, 441277, atg, taa, <, True, True
608 afuA, 441346, 442377, atg, taa, <, True, True
609 Z0461, 442374, 443678, atg, tga, <, True, True
610 Z0462, 443763, 445304, atg, taa, <, True, True
611 Z0463, 445304, 445933, atg, taa, <, True, True
612 tauA, 446236, 447198, atg, taa, >, True, True
613 tauB, 447211, 447978, atg, tga, >, True, True
614 tauC, 447975, 448802, atg, tga, >, True, True
615 tauD, 448799, 449650, atg, taa, >, True, True
616 hemB, 449757, 450764, tgc, taa, <, False, True
617# Start codon reading frame match - shift 1: 450791, gtg: True
618 Z0469, 451257, 454199, aat, ggt, >, False, False
619# Start codon reading frame match - shift -6: 451279, atg: True
620# Start codon reading frame match - shift 1: 451286, atg: True
621# Stop codon reading frame match - shift 2: 454227, taa: True
622 yaiV, 454242, 454910, taa, att, >, False, False
623# Start codon reading frame match - shift 2: 454272, atg: True
624# Stop codon reading frame match - shift 2: 454938, taa: True
625# Matching shift 2
626 yaiV, 454242, 454910, atg, taa, >, True, True
627 yaiH, 454911, 456068, ttg, tga, <, False, True
628 sbmA, 456420, 457640, atg, taa, >, True, True
629 yaiW, 457653, 458747, atg, tga, >, True, True
630 Z0475, 458806, 459114, atg, taa, <, True, True
631 Z0476, 459242, 459586, gtg, taa, >, True, True
632 Z0477, 459610, 460704, atg, taa, <, True, True
633 yaiB, 461167, 461427, atg, taa, >, True, True
634 phoA, 461459, 462943, ttg, taa, >, False, True
635 psiF, 463044, 463382, atg, tga, >, True, True
636 yaiC, 463484, 464599, atg, tga, >, True, True
637 proC, 464616, 465425, atg, tga, <, True, True
638 Z0483, 465425, 466003, ttg, taa, >, False, True
639 aroL, 466186, 466710, atg, tga, >, True, True
640 yaiA, 466760, 466951, atg, tga, >, True, True
641 aroM, 467209, 467886, atg, taa, >, True, True
642 yaiE, 467958, 468242, atg, taa, >, True, True
643 Z0489, 470384, 470665, ttg, tga, >, False, True
644# Start codon reading frame match - shift -10: 470404, gtg: True
645# Start codon reading frame match - shift -5: 470409, gtg: True
646 Z0491, 470662, 471111, atg, tag, >, True, True
647 yaiD, 471196, 472107, atg, taa, <, True, True
648 yajF, 472094, 473140, ttg, taa, >, False, True
649 araJ, 473283, 474467, atg, tag, <, True, True
650 sbcC, 474593, 477736, atg, taa, <, True, True
651 sbcD, 477733, 478935, atg, tga, <, True, True
652 phoB, 479125, 479814, atg, taa, >, True, True
653 phoR, 479872, 481167, gtg, taa, >, True, True
654 brnQ, 481574, 482893, atg, taa, >, True, True
655 proY, 482969, 484342, atg, taa, >, True, True
656 malZ, 484498, 486315, atg, aac, >, True, False
657# Stop codon reading frame match - shift -2: 486341, tga: True
658# Stop codon reading frame match - shift 3: 486346, taa: True
659 Z0502, 486503, 487948, gat, aaa, >, False, False
660# Start codon reading frame match - shift -10: 486523, gtg: True
661# Start codon reading frame match - shift 3: 486536, atg: True
662# Stop codon reading frame match - shift -4: 487972, taa: True
663# Stop codon reading frame match - shift 3: 487979, tag: True
664# Stop codon reading frame match - shift 6: 487982, tga: True
665 yajB, 487969, 488550, aat, aac, <, False, False
666# Start codon reading frame match - shift 3: 488581, atg: True
667# Stop codon reading frame match - shift 3: 488002, tga: True
668# Matching shift 3
669 yajB, 487969, 488550, atg, tga, <, True, True
670 queA, 488643, 489713, atg, taa, >, True, True
671 tgt, 489768, 490895, atg, taa, >, True, True
672 yajC, 490918, 491250, atg, taa, >, True, True
673 secD, 491278, 493125, gtg, tga, >, True, True
674 secF, 493136, 494107, gtg, taa, >, True, True
675 Z0509, 494258, 494500, atg, taa, >, True, True
676 Z0510, 494493, 494774, gtg, taa, >, True, True
677 yajD, 494862, 495209, atg, tga, >, True, True
678 tsx, 495386, 496270, tga, tga, <, False, True
679# Start codon reading frame match - shift 1: 496302, atg: True
680 yajI, 496569, 497168, tgc, aaa, <, False, False
681# Start codon reading frame match - shift 1: 497200, atg: True
682# Stop codon reading frame match - shift -7: 496595, tag: True
683# Stop codon reading frame match - shift 1: 496603, taa: True
684# Matching shift 1
685 yajI, 496569, 497168, atg, taa, <, True, True
686 ybaD, 497259, 497708, atg, taa, >, True, True
687 ribD, 497712, 498815, gtg, tga, >, True, True
688 Z0516, 498904, 499374, atg, tga, >, True, True
689 nusB, 499394, 499813, gtg, taa, >, True, True
690 thiL, 499891, 500868, atg, taa, >, True, True
691 pgpA, 500846, 501361, atg, taa, >, True, True
692 Z0521, 501539, 503110, atg, tga, <, True, True
693 yajO, 503341, 504315, atg, taa, <, True, True
694 dxs, 504370, 506232, atg, taa, <, True, True
695 ispA, 506257, 507156, atg, taa, <, True, True
696 xseB, 507156, 507398, atg, taa, <, True, True
697 yajK, 507604, 509052, atg, taa, >, True, True
698 thiJ, 509106, 509702, gtg, tag, <, True, True
699 apbA, 509659, 510570, atg, tag, <, True, True
700 yajQ, 510720, 511229, atg, taa, >, True, True
701 yajR, 511357, 512727, gtg, taa, <, True, True
702 cyoE, 512870, 513760, atg, taa, <, True, True
703 cyoD, 513772, 514101, atg, taa, <, True, True
704 cyoC, 514101, 514715, atg, taa, <, True, True
705 cyoB, 514705, 516696, atg, tga, <, True, True
706 cyoA, 516718, 517665, atg, taa, <, True, True
707 ampG, 518125, 519600, atg, taa, <, True, True
708 yajG, 519644, 520324, atg, taa, <, True, True
709 bolA, 520494, 520844, atg, taa, >, True, True
710 tig, 521188, 522486, atg, taa, >, True, True
711 clpP, 522731, 523354, atg, tga, >, True, True
712 clpX, 523480, 524754, atg, taa, >, True, True
713 lon, 524897, 527296, gtg, tag, >, True, True
714 hupB, 527505, 527777, gtg, taa, >, True, True
715 ybaU, 527969, 529840, atg, taa, >, True, True
716 ybaV, 529992, 530363, atg, taa, >, True, True
717 ybaW, 530469, 530867, atg, taa, >, True, True
718 ybaX, 530919, 531614, atg, taa, <, True, True
719 ybaE, 531679, 533379, atg, tga, <, True, True
720 cof, 533467, 534297, gtg, taa, >, True, True
721 ybaO, 534449, 534907, atg, taa, >, True, True
722 mdlA, 534937, 536709, gtg, tag, >, True, True
723 mdlB, 536702, 538483, atg, tga, >, True, True
724 glnK, 538664, 539002, atg, taa, >, True, True
725 amtB, 539032, 540318, atg, ata, >, True, False
726# Stop codon reading frame match - shift -6: 540344, taa: True
727# Stop codon reading frame match - shift 1: 540351, taa: True
728 tesB, 540367, 541227, tga, aaa, <, False, False
729# Start codon reading frame match - shift 1: 541260, atg: True
730# Stop codon reading frame match - shift -7: 540394, tag: True
731# Stop codon reading frame match - shift 1: 540402, taa: True
732# Matching shift 1
733 tesB, 540367, 541227, atg, taa, <, True, True
734 ybaY, 541445, 542017, atg, taa, >, True, True
735 ybaZ, 542050, 542421, atg, taa, <, True, True
736 ffs, 542492, 542629, gcg, ccc, >, False, False
737# Start codon reading frame match - shift -10: 542517, atg: True
738 ybaA, 542740, 543093, atg, tag, >, True, True
739 ylaB, 543135, 544691, atg, tga, <, True, True
740 ylaC, 544849, 545358, gtg, taa, <, True, True
741 ylaD, 545435, 545986, atg, taa, <, True, True
742 hha, 546158, 546376, atg, taa, <, True, True
743 ybaJ, 546402, 546776, atg, tag, <, True, True
744 acrB, 547322, 550471, atg, tga, <, True, True
745 acrA, 550494, 551687, atg, taa, <, True, True
746 acrR, 551829, 552476, atg, taa, >, True, True
747 aefA, 552604, 555966, atg, taa, >, True, True
748 Z0583, 556005, 556169, atg, taa, <, True, True
749 priC, 556183, 556710, tga, tag, <, False, True
750# Start codon reading frame match - shift 1: 556744, gtg: True
751 ybaN, 556780, 557157, tat, ctg, >, False, False
752# Start codon reading frame match - shift 1: 556816, atg: True
753# Stop codon reading frame match - shift 1: 557191, tga: True
754# Matching shift 1
755 ybaN, 556780, 557157, atg, tga, >, True, True
756 apt, 557310, 557861, atg, taa, >, True, True
757 dnaX, 557990, 559921, atg, tga, >, True, True
758 ybaB, 559974, 560303, atg, tga, >, True, True
759 recR, 560303, 560908, atg, taa, >, True, True
760 htpG, 561018, 562892, atg, cct, >, True, False
761# Stop codon reading frame match - shift 2: 562928, tga: True
762# Stop codon reading frame match - shift 7: 562933, taa: True
763 adk, 563073, 563717, caa, gct, >, False, False
764# Start codon reading frame match - shift 2: 563111, atg: True
765# Stop codon reading frame match - shift 2: 563753, taa: True
766# Matching shift 2
767 adk, 563073, 563717, atg, taa, >, True, True
768 hemH, 563849, 564811, atg, taa, >, True, True
769 ybaC, 564808, 565767, atg, tag, <, True, True
770 gsk, 565919, 567223, atg, taa, >, True, True
771 ybaL, 567356, 569032, atg, taa, <, True, True
772 fsr, 569269, 570489, tgg, gat, <, False, False
773# Start codon reading frame match - shift -9: 570516, gtg: True
774# Start codon reading frame match - shift -5: 570520, atg: True
775# Start codon reading frame match - shift 1: 570526, atg: True
776# Stop codon reading frame match - shift 1: 569308, tga: True
777# Stop codon reading frame match - shift 8: 569315, taa: True
778 ushA, 570707, 572359, tat, gta, >, False, False
779# Start codon reading frame match - shift 1: 570746, atg: True
780# Stop codon reading frame match - shift -10: 572385, tga: True
781# Stop codon reading frame match - shift 1: 572396, taa: True
782# Matching shift 1
783 ushA, 570707, 572359, atg, taa, >, True, True
784 ybaK, 572396, 572875, atg, taa, <, True, True
785 ybaP, 573079, 573873, atg, taa, <, True, True
786 ybaQ, 573957, 574352, atg, taa, >, True, True
787 ybaR, 574567, 577071, atg, taa, <, True, True
788 ybaS, 577333, 578265, atg, tga, >, True, True
789 ybaT, 578268, 579560, atg, taa, >, True, True
790 Z0608, 579898, 581253, atg, taa, >, True, True
791 Z0609, 581356, 585741, atg, tta, >, True, False
792# Stop codon reading frame match - shift 1: 585779, tag: True
793 Z0615, 585949, 601515, ggt, tga, >, False, True
794# Start codon reading frame match - shift 1: 585989, gtg: True
795 Z0634, 601519, 603681, tgg, ggt, >, False, False
796# Start codon reading frame match - shift -4: 601554, atg: True
797# Start codon reading frame match - shift -1: 601557, gtg: True
798# Start codon reading frame match - shift 2: 601560, gtg: True
799# Stop codon reading frame match - shift -5: 603713, taa: True
800 Z0635, 603678, 604853, ggg, tgc, >, False, False
801 ybbI, 604925, 605257, aga, atc, >, False, False
802# Start codon reading frame match - shift -6: 604958, atg: True
803 Z0638, 605461, 605883, ctc, agg, <, False, False
804# Start codon reading frame match - shift 8: 605928, atg: True
805 Z0639, 605968, 606984, aaa, tcc, <, False, False
806# Stop codon reading frame match - shift -9: 605998, taa: True
807 Z0640, 607351, 607713, gga, gcc, >, False, False
808# Stop codon reading frame match - shift -9: 607741, tga: True
809# Stop codon reading frame match - shift -5: 607745, taa: True
810 ybbJ, 607892, 608350, aat, tga, <, False, True
811# Start codon reading frame match - shift 8: 608395, atg: True
812 ybbK, 608347, 609264, tat, ata, <, False, False
813# Stop codon reading frame match - shift -1: 608385, tag: True
814# Stop codon reading frame match - shift 2: 608388, taa: True
815 ybbL, 609410, 610087, agg, atg, >, False, False
816# Stop codon reading frame match - shift 1: 610125, tga: True
817 ybbM, 610047, 610853, act, tga, >, False, True
818# Start codon reading frame match - shift -8: 610078, gtg: True
819 ybbN, 610916, 611806, aat, tga, <, False, True
820 ybbO, 611831, 612640, agc, gcg, <, False, False
821# Stop codon reading frame match - shift -7: 611863, taa: True
822# Stop codon reading frame match - shift 6: 611876, tga: True
823 tesA, 612630, 613256, caa, aga, <, False, False
824# Start codon reading frame match - shift -5: 613288, atg: True
825# Start codon reading frame match - shift 8: 613301, atg: True
826# Stop codon reading frame match - shift -6: 612663, tga: True
827 ybbA, 613224, 613910, agg, agg, >, False, False
828 ybbP, 613907, 616321, cag, agt, >, False, False
829 Z0651, 616751, 620947, ggg, gct, >, False, False
830 ybbD, 620928, 621188, ggc, tta, >, False, False
831 Z0654, 621227, 621376, aaa, gca, >, False, False
832# Stop codon reading frame match - shift -9: 621404, taa: True
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