| 1 | <Alphabet:['a', 'c', 'g', 't', 'n']>
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| 2 | Initial HMM DiscreteEmissionHMM(N=2, M=5)
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| 3 | state 0 (initial=0.90)
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| 4 | Emissions: 0.10, 0.10, 0.10, 0.10, 0.60
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| 5 | Transitions: ->0 (0.60), ->1 (0.40)
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| 6 | state 1 (initial=0.10)
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| 7 | Emissions: 0.20, 0.30, 0.30, 0.20, 0.10
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| 8 | Transitions: ->0 (0.30), ->1 (0.70)
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| 9 |
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| 10 | Observation sequence : nngaagtgactttggngagc
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| 11 | Observations : nngaagtgactttggngagc
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| 12 | thrL, 190, 273, atg, tga, >, True, True
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| 13 | thrA, 354, 2816, atg, tga, >, True, True
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| 14 | thrB, 2818, 3750, atg, taa, >, True, True
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| 15 | thrC, 3751, 5037, atg, taa, >, True, True
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| 16 | Z0005, 5251, 5547, gtg, taa, >, True, True
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| 17 | yaaA, 5700, 6476, atg, taa, <, True, True
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| 18 | yaaJ, 6546, 7976, atg, taa, <, True, True
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| 19 | talB, 8255, 9208, atg, taa, >, True, True
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| 20 | mog, 9323, 9910, atg, taa, >, True, True
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| 21 | yaaH, 9945, 10511, atg, taa, <, True, True
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| 22 | Z0011, 10660, 11373, atg, tga, <, True, True
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| 23 | htgA, 10742, 11362, ctg, taa, >, False, True
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| 24 | yaaI, 11399, 11803, atg, taa, <, True, True
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| 25 | dnaK, 12180, 14096, atg, taa, >, True, True
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| 26 | dnaJ, 14185, 15315, atg, taa, >, True, True
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| 27 | gef, 15419, 15628, tgc, taa, <, False, True
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| 28 | # Start codon reading frame match - shift -10: 15615, atg: True
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| 29 | # Start codon reading frame match - shift 1: 15626, atg: True
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| 30 | nhaA, 16157, 17323, agt, ttg, >, False, False
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| 31 | # Start codon reading frame match - shift 1: 16157, gtg: True
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| 32 | # Stop codon reading frame match - shift 1: 17321, tga: True
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| 33 | # Matching shift 1
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| 34 | nhaA, 16157, 17323, gtg, tga, >, True, True
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| 35 | nhaR, 17383, 18288, atg, taa, >, True, True
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| 36 | Z0020, 18326, 18949, atg, taa, <, True, True
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| 37 | Z0021, 18960, 19286, atg, taa, <, True, True
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| 38 | Z0022, 19299, 21749, atg, taa, <, True, True
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| 39 | Z0023, 21762, 22445, gtg, taa, <, True, True
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| 40 | Z0024, 22495, 23028, atg, taa, <, True, True
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| 41 | Z0025, 23330, 24751, atg, taa, <, True, True
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| 42 | rpsT, 25221, 25484, ttg, taa, <, False, True
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| 43 | Z0028, 25587, 25811, atg, tga, >, True, True
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| 44 | ribF, 25819, 26760, atg, taa, >, True, True
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| 45 | ileS, 26803, 29619, atg, ctg, >, True, False
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| 46 | # Stop codon reading frame match - shift -9: 29608, taa: True
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| 47 | # Stop codon reading frame match - shift 1: 29618, tga: True
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| 48 | # Stop codon reading frame match - shift 4: 29621, tga: True
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| 49 | lspA, 29619, 30113, gat, ata, >, False, False
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| 50 | # Start codon reading frame match - shift 1: 29620, atg: True
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| 51 | # Stop codon reading frame match - shift 1: 30112, taa: True
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| 52 | # Stop codon reading frame match - shift 4: 30115, taa: True
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| 53 | slpA, 30201, 30650, cat, gta, >, False, False
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| 54 | # Start codon reading frame match - shift 1: 30202, atg: True
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| 55 | # Stop codon reading frame match - shift 1: 30649, taa: True
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| 56 | # Matching shift 1
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| 57 | slpA, 30201, 30650, atg, taa, >, True, True
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| 58 | lytB, 30652, 31602, atg, taa, >, True, True
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| 59 | yaaF, 31668, 32582, atg, taa, >, True, True
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| 60 | dapB, 32749, 33570, atg, taa, >, True, True
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| 61 | carA, 34026, 35174, ttg, taa, >, False, True
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| 62 | # Start codon reading frame match - shift -5: 34022, gtg: True
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| 63 | carB, 35192, 38413, atg, taa, >, True, True
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| 64 | Z0039, 38421, 38639, atg, tga, <, True, True
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| 65 | Z0040, 38569, 39069, gtg, taa, >, True, True
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| 66 | caiE, 39188, 39799, gtg, tga, <, True, True
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| 67 | caiD, 39784, 40677, atg, taa, <, True, True
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| 68 | caiC, 40678, 42246, atg, taa, <, True, True
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| 69 | caiB, 42305, 43522, atg, taa, <, True, True
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| 70 | caiA, 43651, 44793, atg, taa, <, True, True
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| 71 | caiT, 44824, 46338, aag, taa, <, False, True
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| 72 | # Start codon reading frame match - shift -4: 46333, atg: True
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| 73 | # Start codon reading frame match - shift 3: 46340, atg: True
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| 74 | fixA, 46781, 47587, gat, att, >, False, False
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| 75 | # Start codon reading frame match - shift 3: 46785, atg: True
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| 76 | # Stop codon reading frame match - shift 3: 47589, taa: True
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| 77 | # Matching shift 3
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| 78 | fixA, 46781, 47587, atg, taa, >, True, True
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| 79 | fixB, 47602, 48543, atg, tga, >, True, True
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| 80 | fixC, 48594, 49880, atg, atg, >, True, False
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| 81 | # Stop codon reading frame match - shift -10: 49872, tga: True
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| 82 | # Stop codon reading frame match - shift 1: 49883, tga: True
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| 83 | fixX, 49877, 50164, tat, ctg, >, False, False
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| 84 | # Start codon reading frame match - shift -10: 49871, gtg: True
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| 85 | # Start codon reading frame match - shift 1: 49882, atg: True
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| 86 | # Stop codon reading frame match - shift 1: 50167, tga: True
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| 87 | # Matching shift 1
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| 88 | fixX, 49877, 50164, atg, tga, >, True, True
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| 89 | yaaU, 50222, 51553, atg, taa, >, True, True
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| 90 | yabF, 51661, 52191, atg, tag, >, True, True
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| 91 | kefC, 52184, 54046, atg, cta, >, True, False
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| 92 | # Stop codon reading frame match - shift 1: 54050, taa: True
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| 93 | # Stop codon reading frame match - shift 4: 54053, taa: True
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| 94 | Z0055, 54238, 54717, aat, gta, >, False, False
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| 95 | # Start codon reading frame match - shift 1: 54244, atg: True
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| 96 | # Stop codon reading frame match - shift 1: 54721, taa: True
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| 97 | # Matching shift 1
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| 98 | Z0055, 54238, 54717, atg, taa, >, True, True
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| 99 | Z0056, 54803, 55036, atg, tag, >, True, True
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| 100 | Z0057, 55039, 55353, atg, taa, >, True, True
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| 101 | apaH, 55350, 56198, atg, taa, <, True, True
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| 102 | apaG, 56205, 56582, atg, taa, <, True, True
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| 103 | ksgA, 56585, 57406, atg, taa, <, True, True
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| 104 | pdxA, 57403, 58392, atg, tga, <, True, True
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| 105 | surA, 58392, 59678, atg, taa, <, True, True
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| 106 | imp, 59731, 62085, atg, tga, <, True, True
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| 107 | yabH, 62340, 63155, atg, tga, >, True, True
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| 108 | Z0065, 63450, 64202, atg, tga, >, True, True
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| 109 | yabO, 64620, 65279, tgg, aac, <, False, False
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| 110 | # Start codon reading frame match - shift -5: 65278, atg: True
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| 111 | # Start codon reading frame match - shift 1: 65284, atg: True
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| 112 | # Stop codon reading frame match - shift 1: 64627, taa: True
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| 113 | # Matching shift 1
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| 114 | yabO, 64620, 65279, atg, taa, <, True, True
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| 115 | Z0067, 65291, 68197, atg, taa, <, True, True
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| 116 | polB, 68361, 70712, gtg, tga, <, True, True
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| 117 | araD, 70787, 71482, atg, taa, <, True, True
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| 118 | araA, 71682, 73184, atg, taa, <, True, True
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| 119 | araB, 73195, 74895, atg, taa, <, True, True
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| 120 | araC, 75234, 76112, atg, taa, >, True, True
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| 121 | yabI, 76198, 76962, atg, tag, >, True, True
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| 122 | yabJ, 77049, 77747, atg, taa, <, True, True
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| 123 | yabK, 77731, 79341, atg, tga, <, True, True
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| 124 | tbpA, 79317, 80300, gtg, taa, <, True, True
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| 125 | Z0078, 80672, 81241, atg, tga, >, True, True
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| 126 | yabN, 81470, 83128, atg, tag, <, True, True
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| 127 | leuD, 83456, 84061, atg, tag, <, True, True
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| 128 | leuC, 84072, 85472, atg, taa, <, True, True
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| 129 | leuB, 85475, 86569, gtg, taa, <, True, True
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| 130 | leuA, 86566, 88137, atg, tga, <, True, True
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| 131 | leuL, 88230, 88316, atg, taa, <, True, True
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| 132 | leuO, 88956, 89918, gtg, taa, >, True, True
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| 133 | ilvI, 90152, 91960, atg, tga, >, True, True
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| 134 | ilvH, 91963, 92454, atg, tga, >, True, True
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| 135 | fruL, 92466, 92552, atg, taa, >, True, True
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| 136 | fruR, 92634, 93638, gtg, taa, >, True, True
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| 137 | yabB, 94240, 94698, atg, taa, >, True, True
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| 138 | yabC, 94700, 95641, atg, tga, >, True, True
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| 139 | ftsL, 95638, 96003, atg, taa, >, True, True
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| 140 | ftsI, 96019, 97785, atg, taa, >, True, True
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| 141 | murE, 97772, 99259, gtg, cat, >, True, False
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| 142 | # Stop codon reading frame match - shift -6: 99258, tga: True
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| 143 | # Stop codon reading frame match - shift 2: 99266, tga: True
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| 144 | # Stop codon reading frame match - shift 6: 99270, tag: True
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| 145 | murF, 99256, 100614, gca, gtt, >, False, False
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| 146 | # Start codon reading frame match - shift -6: 99257, gtg: True
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| 147 | # Start codon reading frame match - shift 2: 99265, atg: True
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| 148 | # Stop codon reading frame match - shift 2: 100621, tag: True
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| 149 | # Matching shift 2
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| 150 | murF, 99256, 100614, atg, tag, >, True, True
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| 151 | mraY, 100608, 101690, atg, taa, >, True, True
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| 152 | murD, 101693, 103009, atg, tga, >, True, True
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| 153 | ftsW, 103009, 104253, atg, tga, >, True, True
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| 154 | murG, 104250, 105317, atg, taa, >, True, True
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| 155 | murC, 105371, 106846, atg, ctg, >, True, False
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| 156 | # Stop codon reading frame match - shift -3: 106850, tga: True
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| 157 | # Stop codon reading frame match - shift 1: 106854, tga: True
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| 158 | # Stop codon reading frame match - shift 4: 106857, taa: True
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| 159 | ddlB, 106839, 107759, cat, cta, >, False, False
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| 160 | # Start codon reading frame match - shift 1: 106849, atg: True
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| 161 | # Stop codon reading frame match - shift 1: 107767, taa: True
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| 162 | # Matching shift 1
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| 163 | ddlB, 106839, 107759, atg, taa, >, True, True
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| 164 | ftsQ, 107761, 108591, atg, tga, >, True, True
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| 165 | ftsA, 108588, 109850, atg, taa, >, True, True
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| 166 | ftsZ, 109911, 111062, atg, taa, >, True, True
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| 167 | lpxC, 111163, 112080, atg, taa, >, True, True
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| 168 | yacA, 112236, 112823, gtg, taa, >, True, True
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| 169 | secA, 112885, 115590, atg, taa, >, True, True
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| 170 | mutT, 115650, 116048, atg, taa, >, True, True
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| 171 | Z0110, 116054, 116188, gtg, tga, <, True, True
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| 172 | yacG, 116139, 116336, atg, tga, <, True, True
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| 173 | yacF, 116346, 117089, atg, taa, <, True, True
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| 174 | yacE, 117089, 117709, atg, taa, <, True, True
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| 175 | guaC, 117934, 118977, atg, taa, >, True, True
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| 176 | Z0115, 118897, 119004, gtg, tga, <, True, True
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| 177 | hofC, 119012, 120214, atg, taa, <, True, True
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| 178 | hofB, 120204, 121589, atg, taa, <, True, True
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| 179 | ppdD, 121599, 122039, atg, taa, <, True, True
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| 180 | nadC, 122242, 123135, atg, tag, <, True, True
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| 181 | ampD, 123223, 123774, atg, tga, >, True, True
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| 182 | ampE, 123771, 124625, atg, taa, >, True, True
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| 183 | aroP, 124668, 126041, atg, taa, <, True, True
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| 184 | pdhR, 126582, 127346, atg, tag, >, True, True
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| 185 | aceE, 127507, 130170, atg, taa, >, True, True
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| 186 | aceF, 130185, 132077, atg, taa, >, True, True
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| 187 | lpdA, 132285, 133709, atg, taa, >, True, True
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| 188 | yacH, 133780, 135633, atg, taa, <, True, True
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| 189 | acnB, 135988, 138585, gtg, taa, >, True, True
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| 190 | yacL, 138713, 139123, atg, taa, >, True, True
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| 191 | speD, 139161, 139955, ttg, taa, <, False, True
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| 192 | speE, 139971, 140837, atg, taa, <, True, True
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| 193 | yacC, 140943, 141413, ttg, taa, <, False, True
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| 194 | yacK, 141456, 143006, atg, taa, >, True, True
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| 195 | gcd, 143208, 145598, atg, taa, <, True, True
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| 196 | hpt, 145792, 146340, atg, taa, >, True, True
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| 197 | yadF, 146381, 147043, atg, taa, <, True, True
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| 198 | yadG, 147152, 148078, atg, tga, >, True, True
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| 199 | yadH, 148075, 148845, atg, taa, >, True, True
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| 200 | yadI, 148950, 149390, atg, tta, >, True, False
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| 201 | # Stop codon reading frame match - shift -6: 149392, tga: True
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| 202 | # Stop codon reading frame match - shift 1: 149399, taa: True
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| 203 | yadE, 149454, 150683, cat, ata, >, False, False
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| 204 | # Start codon reading frame match - shift -10: 149454, gtg: True
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| 205 | # Start codon reading frame match - shift 1: 149465, atg: True
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| 206 | # Stop codon reading frame match - shift 1: 150692, taa: True
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| 207 | # Matching shift 1
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| 208 | yadE, 149454, 150683, atg, taa, >, True, True
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| 209 | panD, 150687, 151067, atg, tga, <, True, True
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| 210 | yadD, 151341, 152237, atg, taa, >, True, True
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| 211 | panC, 152536, 153387, gtg, taa, <, True, True
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| 212 | panB, 153399, 154193, atg, taa, <, True, True
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| 213 | yadC, 154328, 155437, atg, taa, <, True, True
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| 214 | yadK, 155449, 156039, atg, taa, <, True, True
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| 215 | yadL, 156060, 156665, atg, taa, <, True, True
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| 216 | yadM, 156680, 157240, atg, taa, <, True, True
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| 217 | htrE, 157242, 159740, tgg, taa, <, False, True
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| 218 | # Start codon reading frame match - shift -6: 159743, atg: True
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| 219 | # Start codon reading frame match - shift 1: 159750, gtg: True
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| 220 | ecpD, 159884, 160615, tgc, aaa, <, False, False
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|---|
| 221 | # Start codon reading frame match - shift -5: 160619, atg: True
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| 222 | # Start codon reading frame match - shift 1: 160625, gtg: True
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|---|
| 223 | # Stop codon reading frame match - shift -6: 159889, taa: True
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| 224 | # Stop codon reading frame match - shift 1: 159896, taa: True
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| 225 | # Matching shift 1
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| 226 | ecpD, 159884, 160615, gtg, taa, <, True, True
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| 227 | yadN, 160696, 161301, atg, taa, <, True, True
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| 228 | folK, 161573, 162055, atg, tag, <, True, True
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| 229 | pcnB, 162052, 163416, gct, tga, <, False, True
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| 230 | # Start codon reading frame match - shift 2: 163428, gtg: True
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| 231 | yadB, 163509, 164435, gct, agc, <, False, False
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|---|
| 232 | # Start codon reading frame match - shift 2: 164447, atg: True
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|---|
| 233 | # Stop codon reading frame match - shift -9: 163512, tag: True
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| 234 | # Stop codon reading frame match - shift -5: 163516, tga: True
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|---|
| 235 | # Stop codon reading frame match - shift 2: 163523, tga: True
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|---|
| 236 | # Matching shift 2
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|---|
| 237 | yadB, 163509, 164435, atg, tga, <, True, True
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|---|
| 238 | dksA, 164472, 164927, atg, taa, <, True, True
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| 239 | sfsA, 165105, 165809, atg, tag, <, True, True
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| 240 | yadP, 165824, 166363, gtg, taa, <, True, True
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| 241 | hrpB, 166383, 168857, atg, taa, >, True, True
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| 242 | mrcB, 169053, 171587, atg, taa, >, True, True
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| 243 | fhuA, 171807, 174050, atg, taa, >, True, True
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| 244 | fhuC, 174101, 174898, atg, tga, >, True, True
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| 245 | fhuD, 174898, 175788, atg, tga, >, True, True
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| 246 | fhuB, 175785, 177767, gtg, taa, >, True, True
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| 247 | hemL, 177802, 179082, atg, tga, <, True, True
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| 248 | yadQ, 179307, 180728, atg, ttg, >, True, False
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| 249 | # Stop codon reading frame match - shift 1: 180741, tga: True
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| 250 | yadR, 180810, 181154, tat, cta, >, False, False
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|---|
| 251 | # Start codon reading frame match - shift 1: 180825, atg: True
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|---|
| 252 | # Start codon reading frame match - shift 5: 180829, gtg: True
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|---|
| 253 | # Start codon reading frame match - shift 8: 180832, atg: True
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|---|
| 254 | # Stop codon reading frame match - shift -6: 181160, tag: True
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|---|
| 255 | # Stop codon reading frame match - shift 1: 181167, taa: True
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|---|
| 256 | yadS, 181201, 181824, tgc, gaa, <, False, False
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|---|
| 257 | # Start codon reading frame match - shift 1: 181837, atg: True
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|---|
| 258 | # Stop codon reading frame match - shift 1: 181216, tga: True
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|---|
| 259 | # Matching shift 1
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|---|
| 260 | yadS, 181201, 181824, atg, tga, <, True, True
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|---|
| 261 | yadT, 181862, 182662, atg, tag, <, True, True
|
|---|
| 262 | pfs, 182655, 183353, atg, taa, <, True, True
|
|---|
| 263 | dgt, 183437, 184954, atg, taa, >, True, True
|
|---|
| 264 | htrA, 185084, 186508, atg, taa, >, True, True
|
|---|
| 265 | yaeG, 186645, 187820, gtg, tag, >, True, True
|
|---|
| 266 | yaeH, 187909, 188295, atg, taa, <, True, True
|
|---|
| 267 | dapD, 188610, 189434, atg, taa, <, True, True
|
|---|
| 268 | glnD, 189465, 192137, atg, tga, <, True, True
|
|---|
| 269 | map, 192199, 192993, atg, taa, <, True, True
|
|---|
| 270 | rpsB, 193361, 194086, atg, taa, >, True, True
|
|---|
| 271 | tsf, 194344, 195195, atg, taa, >, True, True
|
|---|
| 272 | pyrH, 195342, 196067, atg, taa, >, True, True
|
|---|
| 273 | frr, 196217, 196774, gtg, tga, >, True, True
|
|---|
| 274 | yaeM, 196866, 198062, atg, tga, >, True, True
|
|---|
| 275 | yaeS, 198248, 199009, gtg, tga, >, True, True
|
|---|
| 276 | cdsA, 199130, 199879, atg, taa, >, True, True
|
|---|
| 277 | yaeL, 199891, 201243, atg, tga, >, True, True
|
|---|
| 278 | yaeT, 201273, 203705, atg, taa, >, True, True
|
|---|
| 279 | hlpA, 203826, 204311, gtg, taa, >, True, True
|
|---|
| 280 | lpxD, 204315, 205340, atg, taa, >, True, True
|
|---|
| 281 | fabZ, 205445, 205900, ttg, tga, >, False, True
|
|---|
| 282 | lpxA, 205904, 206692, gtg, taa, >, True, True
|
|---|
| 283 | lpxB, 206692, 207840, atg, tga, >, True, True
|
|---|
| 284 | rnhB, 207837, 208433, atg, tga, >, True, True
|
|---|
| 285 | dnaE, 208470, 211952, atg, taa, >, True, True
|
|---|
| 286 | accA, 211965, 212924, atg, taa, >, True, True
|
|---|
| 287 | ldcC, 213023, 215164, atg, taa, >, True, True
|
|---|
| 288 | yaeR, 215194, 215610, gtg, taa, >, True, True
|
|---|
| 289 | mesJ, 215675, 216970, atg, tag, >, True, True
|
|---|
| 290 | yaeO, 217023, 217283, atg, tga, <, True, True
|
|---|
| 291 | Z0202, 217636, 218094, atg, tag, >, True, True
|
|---|
| 292 | yaeJ, 218178, 218588, atg, taa, >, True, True
|
|---|
| 293 | cutF, 218602, 219312, atg, taa, >, True, True
|
|---|
| 294 | yaeF, 219512, 220336, atg, tga, <, True, True
|
|---|
| 295 | proS, 220389, 222107, atg, tga, <, True, True
|
|---|
| 296 | Z0207, 222218, 222925, atg, taa, <, True, True
|
|---|
| 297 | rcsF, 222922, 223326, atg, tga, <, True, True
|
|---|
| 298 | yaeC, 223444, 224259, atg, taa, <, True, True
|
|---|
| 299 | yaeE, 224299, 224952, atg, taa, <, True, True
|
|---|
| 300 | abc, 224945, 225976, atg, tga, <, True, True
|
|---|
| 301 | yaeD, 226164, 226739, gtg, tga, >, True, True
|
|---|
| 302 | rrsH, 227103, 228644, aaa, tta, >, False, False
|
|---|
| 303 | # Stop codon reading frame match - shift 6: 228663, taa: True
|
|---|
| 304 | ileV, 228713, 228789, agg, cca, >, False, False
|
|---|
| 305 | alaV, 228832, 228907, ggg, cca, >, False, False
|
|---|
| 306 | # Start codon reading frame match - shift -7: 228840, atg: True
|
|---|
| 307 | # Start codon reading frame match - shift -2: 228845, atg: True
|
|---|
| 308 | # Stop codon reading frame match - shift -8: 228912, tag: True
|
|---|
| 309 | # Stop codon reading frame match - shift 9: 228929, tag: True
|
|---|
| 310 | rrlH, 229091, 231993, ggt, cct, >, False, False
|
|---|
| 311 | # Start codon reading frame match - shift -4: 229102, gtg: True
|
|---|
| 312 | # Stop codon reading frame match - shift -10: 231996, tga: True
|
|---|
| 313 | # Stop codon reading frame match - shift -3: 232003, taa: True
|
|---|
| 314 | rrfH, 232086, 232205, ttg, gca, >, False, False
|
|---|
| 315 | # Stop codon reading frame match - shift 9: 232227, taa: True
|
|---|
| 316 | aspU, 232258, 232334, tgg, gcc, >, False, False
|
|---|
| 317 | # Start codon reading frame match - shift -1: 232272, gtg: True
|
|---|
| 318 | # Stop codon reading frame match - shift 9: 232356, taa: True
|
|---|
| 319 | yafB, 232497, 233300, tat, tta, >, False, False
|
|---|
| 320 | # Start codon reading frame match - shift 1: 232513, atg: True
|
|---|
| 321 | # Stop codon reading frame match - shift -9: 233304, tga: True
|
|---|
| 322 | # Stop codon reading frame match - shift 1: 233314, taa: True
|
|---|
| 323 | # Matching shift 1
|
|---|
| 324 | yafB, 232497, 233300, atg, taa, >, True, True
|
|---|
| 325 | yafC, 233297, 234211, atg, taa, <, True, True
|
|---|
| 326 | yafD, 234452, 235252, gtg, taa, >, True, True
|
|---|
| 327 | Z0233, 235330, 236100, atg, taa, >, True, True
|
|---|
| 328 | dniR, 236148, 237506, atg, tga, <, True, True
|
|---|
| 329 | gloB, 237578, 238333, atg, tga, <, True, True
|
|---|
| 330 | yafS, 238349, 239089, gtg, taa, >, True, True
|
|---|
| 331 | rnhA, 239086, 239553, atg, taa, <, True, True
|
|---|
| 332 | dnaQ, 239618, 240349, atg, taa, >, True, True
|
|---|
| 333 | aspV, 240482, 240558, gga, cca, >, False, False
|
|---|
| 334 | Z0243, 240887, 241687, atg, taa, >, True, True
|
|---|
| 335 | Z0244, 241872, 242168, atg, taa, <, True, True
|
|---|
| 336 | Z0245, 242165, 242620, atg, tga, <, True, True
|
|---|
| 337 | Z0246, 242617, 243213, atg, tga, <, True, True
|
|---|
| 338 | Z0247, 243292, 243513, atg, taa, <, True, True
|
|---|
| 339 | Z0248, 243534, 244013, atg, taa, <, True, True
|
|---|
| 340 | Z0249, 243979, 245478, tgt, tga, <, False, True
|
|---|
| 341 | # Start codon reading frame match - shift -1: 245491, gtg: True
|
|---|
| 342 | # Start codon reading frame match - shift 1: 245493, gtg: True
|
|---|
| 343 | Z0250, 245399, 248833, tgc, gag, <, False, False
|
|---|
| 344 | # Stop codon reading frame match - shift 1: 245416, tga: True
|
|---|
| 345 | Z0251, 248970, 249764, tga, aaa, <, False, False
|
|---|
| 346 | # Start codon reading frame match - shift 1: 249779, gtg: True
|
|---|
| 347 | # Stop codon reading frame match - shift 1: 248987, taa: True
|
|---|
| 348 | # Matching shift 1
|
|---|
| 349 | Z0251, 248970, 249764, gtg, taa, <, True, True
|
|---|
| 350 | Z0252, 249761, 250381, atg, tga, <, True, True
|
|---|
| 351 | Z0253, 250386, 251129, atg, taa, <, True, True
|
|---|
| 352 | Z0254, 251126, 253897, atg, tga, <, True, True
|
|---|
| 353 | Z0255, 253906, 254667, atg, taa, <, True, True
|
|---|
| 354 | Z0256, 254672, 256003, atg, taa, <, True, True
|
|---|
| 355 | Z0257, 256006, 256530, atg, taa, <, True, True
|
|---|
| 356 | Z0258, 256527, 257828, atg, tga, <, True, True
|
|---|
| 357 | Z0259, 257832, 258914, atg, taa, <, True, True
|
|---|
| 358 | Z0260, 258878, 260728, tgg, tga, <, False, True
|
|---|
| 359 | # Start codon reading frame match - shift 1: 260744, atg: True
|
|---|
| 360 | Z0261, 260732, 261145, tga, gac, <, False, False
|
|---|
| 361 | # Start codon reading frame match - shift 1: 261161, atg: True
|
|---|
| 362 | # Stop codon reading frame match - shift 1: 260750, tga: True
|
|---|
| 363 | # Matching shift 1
|
|---|
| 364 | Z0261, 260732, 261145, atg, tga, <, True, True
|
|---|
| 365 | Z0262, 261236, 262627, atg, tag, <, True, True
|
|---|
| 366 | Z0263, 262678, 262902, atg, tga, <, True, True
|
|---|
| 367 | Z0264, 262937, 263437, atg, taa, <, True, True
|
|---|
| 368 | Z0265, 263864, 264007, atg, tag, >, True, True
|
|---|
| 369 | Z0266, 264134, 264652, atg, taa, >, True, True
|
|---|
| 370 | Z0267, 264862, 267003, atg, tga, >, True, True
|
|---|
| 371 | Z0268, 267079, 271293, atg, tag, >, True, True
|
|---|
| 372 | Z0269, 271296, 271907, atg, tag, >, True, True
|
|---|
| 373 | Z0271, 272653, 273789, atg, taa, >, True, True
|
|---|
| 374 | Z0272, 273792, 275552, ttg, tag, >, False, True
|
|---|
| 375 | Z0273, 275640, 275777, gtg, taa, <, True, True
|
|---|
| 376 | Z0274, 275754, 276017, atg, taa, >, True, True
|
|---|
| 377 | Z0275, 276198, 277370, gtg, taa, >, True, True
|
|---|
| 378 | yafV, 277488, 278258, gtg, tga, <, True, True
|
|---|
| 379 | ykfE, 278412, 278885, atg, taa, >, True, True
|
|---|
| 380 | yafH, 278928, 281408, gtg, taa, <, True, True
|
|---|
| 381 | gmhA, 281612, 282190, atg, taa, >, True, True
|
|---|
| 382 | yafJ, 282295, 283062, atg, tga, >, True, True
|
|---|
| 383 | yafK, 283033, 283773, atg, taa, <, True, True
|
|---|
| 384 | Z0284, 283929, 284132, atg, taa, <, True, True
|
|---|
| 385 | dinJ, 284208, 284468, atg, taa, <, True, True
|
|---|
| 386 | yafL, 284678, 285427, atg, tag, >, True, True
|
|---|
| 387 | yafM, 285603, 285899, atg, tag, >, True, True
|
|---|
| 388 | fhiA, 286245, 287984, atg, tga, <, True, True
|
|---|
| 389 | mbhA, 287929, 288714, gtg, taa, >, True, True
|
|---|
| 390 | dinP, 288785, 289840, atg, tga, >, True, True
|
|---|
| 391 | yafN, 289892, 290185, atg, taa, >, True, True
|
|---|
| 392 | yafO, 290188, 290586, atg, tga, >, True, True
|
|---|
| 393 | yafP, 290596, 291048, atg, taa, >, True, True
|
|---|
| 394 | Z0296, 291355, 291621, atg, tga, >, True, True
|
|---|
| 395 | prfH, 291590, 292090, gtg, taa, >, True, True
|
|---|
| 396 | pepD, 292147, 293604, tgt, taa, <, False, True
|
|---|
| 397 | # Start codon reading frame match - shift 1: 293621, gtg: True
|
|---|
| 398 | gpt, 293865, 294323, cat, cta, >, False, False
|
|---|
| 399 | # Start codon reading frame match - shift 1: 293884, atg: True
|
|---|
| 400 | # Stop codon reading frame match - shift 1: 294340, taa: True
|
|---|
| 401 | # Matching shift 1
|
|---|
| 402 | gpt, 293865, 294323, atg, taa, >, True, True
|
|---|
| 403 | yafA, 294415, 295659, atg, tta, >, True, False
|
|---|
| 404 | # Stop codon reading frame match - shift 1: 295677, taa: True
|
|---|
| 405 | crl, 295717, 296118, aat, gtg, >, False, False
|
|---|
| 406 | # Start codon reading frame match - shift 1: 295737, atg: True
|
|---|
| 407 | # Stop codon reading frame match - shift -7: 296128, taa: True
|
|---|
| 408 | # Stop codon reading frame match - shift 1: 296136, tga: True
|
|---|
| 409 | # Stop codon reading frame match - shift 5: 296140, tga: True
|
|---|
| 410 | phoE, 296157, 297212, tga, aat, <, False, False
|
|---|
| 411 | # Start codon reading frame match - shift 1: 297230, atg: True
|
|---|
| 412 | # Start codon reading frame match - shift 7: 297236, atg: True
|
|---|
| 413 | # Stop codon reading frame match - shift -2: 296174, tga: True
|
|---|
| 414 | # Stop codon reading frame match - shift 1: 296177, taa: True
|
|---|
| 415 | proB, 297500, 298603, cat, tta, >, False, False
|
|---|
| 416 | # Start codon reading frame match - shift 1: 297520, atg: True
|
|---|
| 417 | # Start codon reading frame match - shift 5: 297524, gtg: True
|
|---|
| 418 | # Stop codon reading frame match - shift -10: 298610, tga: True
|
|---|
| 419 | # Stop codon reading frame match - shift 1: 298621, taa: True
|
|---|
| 420 | proA, 298615, 299868, gat, gta, >, False, False
|
|---|
| 421 | # Start codon reading frame match - shift 1: 298635, atg: True
|
|---|
| 422 | # Stop codon reading frame match - shift 1: 299886, taa: True
|
|---|
| 423 | # Stop codon reading frame match - shift 5: 299890, taa: True
|
|---|
| 424 | thrW, 299983, 300058, ggc, acc, >, False, False
|
|---|
| 425 | # Stop codon reading frame match - shift 6: 300081, taa: True
|
|---|
| 426 | intH, 300073, 301047, tgc, aac, <, False, False
|
|---|
| 427 | # Start codon reading frame match - shift 1: 301065, atg: True
|
|---|
| 428 | # Start codon reading frame match - shift 5: 301069, atg: True
|
|---|
| 429 | # Stop codon reading frame match - shift -7: 300085, tga: True
|
|---|
| 430 | # Stop codon reading frame match - shift 1: 300093, taa: True
|
|---|
| 431 | # Stop codon reading frame match - shift 8: 300100, tga: True
|
|---|
| 432 | Z0308, 301423, 301812, tga, aaa, <, False, False
|
|---|
| 433 | # Start codon reading frame match - shift 1: 301830, atg: True
|
|---|
| 434 | # Stop codon reading frame match - shift 1: 301443, taa: True
|
|---|
| 435 | # Matching shift 1
|
|---|
| 436 | Z0308, 301423, 301812, atg, taa, <, True, True
|
|---|
| 437 | Z0309, 301940, 302653, atg, tga, <, True, True
|
|---|
| 438 | Z0310, 303073, 303366, atg, tga, >, True, True
|
|---|
| 439 | Z0311, 303399, 304007, atg, tga, >, True, True
|
|---|
| 440 | Z0312, 303947, 304321, gtg, tga, >, True, True
|
|---|
| 441 | Z0313, 304318, 304629, atg, tga, >, True, True
|
|---|
| 442 | Z0314, 304629, 305339, atg, taa, >, True, True
|
|---|
| 443 | Z0315, 305351, 305803, gtg, tga, >, True, True
|
|---|
| 444 | Z0316, 305775, 306368, atg, tag, <, True, True
|
|---|
| 445 | Z0317, 306368, 306865, atg, taa, <, True, True
|
|---|
| 446 | pinH, 306856, 307446, atg, tga, >, True, True
|
|---|
| 447 | Z0319, 307504, 308277, atg, tga, <, True, True
|
|---|
| 448 | Z0321, 309101, 309844, atg, tga, >, True, True
|
|---|
| 449 | Z0322, 309886, 310251, gtg, taa, <, True, True
|
|---|
| 450 | Z0324, 310756, 311988, atg, taa, >, True, True
|
|---|
| 451 | Z0325, 311992, 312408, gtg, taa, >, True, True
|
|---|
| 452 | Z0326, 312381, 312998, atg, taa, >, True, True
|
|---|
| 453 | Z0327, 312998, 313456, atg, tga, >, True, True
|
|---|
| 454 | Z0328, 313449, 314081, atg, taa, >, True, True
|
|---|
| 455 | Z0330, 314112, 314702, ttg, taa, >, False, True
|
|---|
| 456 | # Start codon reading frame match - shift -8: 314124, atg: True
|
|---|
| 457 | Z0331, 314702, 315268, atg, taa, >, True, True
|
|---|
| 458 | Z0332, 315678, 315950, atg, tga, <, True, True
|
|---|
| 459 | psuI, 315956, 316507, atg, taa, <, True, True
|
|---|
| 460 | sidI, 316504, 317256, atg, tga, <, True, True
|
|---|
| 461 | Z0335, 317659, 317829, atg, taa, >, True, True
|
|---|
| 462 | Z0336, 318190, 318450, atg, tga, >, True, True
|
|---|
| 463 | Z0337, 318447, 319004, atg, tga, >, True, True
|
|---|
| 464 | Z0338, 319222, 319545, atg, taa, >, True, True
|
|---|
| 465 | Z0339, 319502, 321892, atg, taa, >, True, True
|
|---|
| 466 | Z0340, 322025, 322981, gtg, taa, <, True, True
|
|---|
| 467 | Z0341, 323074, 323112, atg, taa, <, True, True
|
|---|
| 468 | Z0342, 323657, 324556, atg, taa, <, True, True
|
|---|
| 469 | Z0343, 324655, 325377, atg, tga, >, True, True
|
|---|
| 470 | Z0344, 325544, 325822, atg, taa, >, True, True
|
|---|
| 471 | Z0345, 326097, 326246, atg, taa, >, True, True
|
|---|
| 472 | Z0346, 326525, 327409, atg, tga, <, True, True
|
|---|
| 473 | Z0347, 327673, 328731, atg, taa, >, True, True
|
|---|
| 474 | Z0348, 328807, 330000, atg, tag, >, True, True
|
|---|
| 475 | yagQ, 330179, 331135, atg, tga, <, True, True
|
|---|
| 476 | yagR, 331145, 333343, atg, taa, <, True, True
|
|---|
| 477 | yagS, 333340, 334296, atg, tga, <, True, True
|
|---|
| 478 | yagT, 334293, 334982, atg, tga, <, True, True
|
|---|
| 479 | yagU, 335400, 336014, atg, taa, >, True, True
|
|---|
| 480 | ykgJ, 336262, 336591, atg, taa, <, True, True
|
|---|
| 481 | yagV, 336904, 337659, atg, tga, <, True, True
|
|---|
| 482 | yagW, 337583, 339226, atg, taa, <, True, True
|
|---|
| 483 | yagX, 339216, 341741, atg, taa, <, True, True
|
|---|
| 484 | yagY, 341767, 342435, atg, tag, <, True, True
|
|---|
| 485 | yagZ, 342493, 343080, atg, taa, <, True, True
|
|---|
| 486 | ykgK, 343155, 343745, gtg, taa, <, True, True
|
|---|
| 487 | Z0362, 344151, 344375, atg, tga, <, True, True
|
|---|
| 488 | ykgL, 344522, 344713, atg, taa, >, True, True
|
|---|
| 489 | ykgM, 344923, 345186, atg, tga, <, True, True
|
|---|
| 490 | Z0365, 345429, 345830, gtg, tga, >, True, True
|
|---|
| 491 | Z0366, 345827, 346174, atg, taa, >, True, True
|
|---|
| 492 | Z0367, 346224, 347762, atg, taa, >, True, True
|
|---|
| 493 | Z0369, 348575, 349717, atg, taa, <, True, True
|
|---|
| 494 | Z0370, 349953, 350873, atg, taa, <, True, True
|
|---|
| 495 | Z0371, 350967, 351956, atg, tga, >, True, True
|
|---|
| 496 | Z0372, 352244, 352600, atg, taa, <, True, True
|
|---|
| 497 | Z0373, 352631, 352759, atg, tga, >, True, True
|
|---|
| 498 | Z0374, 352793, 353368, atg, taa, <, True, True
|
|---|
| 499 | eaeH, 353934, 358187, atg, taa, >, True, True
|
|---|
| 500 | ykgA, 358308, 359198, gtg, tag, <, True, True
|
|---|
| 501 | Z0377, 359399, 360283, atg, tga, >, True, True
|
|---|
| 502 | ykgB, 360443, 361036, atg, tga, <, True, True
|
|---|
| 503 | Z0379, 361019, 361288, gtg, taa, >, True, True
|
|---|
| 504 | ykgI, 361048, 361299, ttg, taa, <, False, True
|
|---|
| 505 | # Start codon reading frame match - shift -3: 361314, atg: True
|
|---|
| 506 | ykgC, 361393, 362745, atg, taa, <, True, True
|
|---|
| 507 | ykgD, 362944, 363798, atg, tga, >, True, True
|
|---|
| 508 | ykgE, 364325, 365044, gtg, tga, >, True, True
|
|---|
| 509 | ykgF, 365055, 366482, atg, taa, >, True, True
|
|---|
| 510 | ykgG, 366322, 367170, gtg, tga, >, True, True
|
|---|
| 511 | Z0387, 367125, 367337, atg, tga, <, True, True
|
|---|
| 512 | Z0388, 367665, 368081, atg, taa, <, True, True
|
|---|
| 513 | Z0389, 368263, 368505, gtg, taa, <, True, True
|
|---|
| 514 | Z0390, 368429, 369538, atg, tga, <, True, True
|
|---|
| 515 | Z0391, 369565, 370326, atg, taa, <, True, True
|
|---|
| 516 | Z0392, 370480, 370956, atg, tga, <, True, True
|
|---|
| 517 | Z0393, 371156, 371311, atg, tga, <, True, True
|
|---|
| 518 | Z0394, 371604, 371762, atg, taa, <, True, True
|
|---|
| 519 | Z0395, 371783, 372166, atg, tag, <, True, True
|
|---|
| 520 | Z0397, 372972, 373223, atg, tga, >, True, True
|
|---|
| 521 | betA, 373225, 374913, ttg, tga, <, False, True
|
|---|
| 522 | betB, 374927, 376399, atg, taa, <, True, True
|
|---|
| 523 | betI, 376413, 377000, atg, taa, <, True, True
|
|---|
| 524 | betT, 377129, 379162, atg, tga, >, True, True
|
|---|
| 525 | Z0402, 379670, 383719, atg, tga, >, True, True
|
|---|
| 526 | yahA, 383852, 384949, gtg, tga, >, True, True
|
|---|
| 527 | Z0404, 384991, 385251, gtg, taa, <, True, True
|
|---|
| 528 | Z0405, 385212, 385922, atg, tag, <, True, True
|
|---|
| 529 | Z0406, 386014, 386316, atg, taa, <, True, True
|
|---|
| 530 | yahD, 386779, 387384, atg, taa, >, True, True
|
|---|
| 531 | yahE, 387424, 388287, gtg, taa, >, True, True
|
|---|
| 532 | yahF, 388277, 389824, atg, tga, >, True, True
|
|---|
| 533 | yahG, 389824, 391242, atg, tga, >, True, True
|
|---|
| 534 | yahI, 391757, 392707, atg, taa, >, True, True
|
|---|
| 535 | yahJ, 392717, 394099, atg, tga, >, True, True
|
|---|
| 536 | Z0414, 394398, 394808, atg, tag, >, True, True
|
|---|
| 537 | Z0415, 395059, 396045, atg, taa, >, True, True
|
|---|
| 538 | Z0416, 396094, 396354, atg, tag, >, True, True
|
|---|
| 539 | Z0417, 396400, 397578, gtg, tga, >, True, True
|
|---|
| 540 | Z0418, 397571, 398542, atg, tga, >, True, True
|
|---|
| 541 | Z0419, 398539, 399495, atg, taa, >, True, True
|
|---|
| 542 | yahK, 399582, 400631, atg, tga, >, True, True
|
|---|
| 543 | yahL, 400874, 401689, atg, tag, >, True, True
|
|---|
| 544 | Z0422, 402035, 402115, ccg, cca, >, False, False
|
|---|
| 545 | Z0423, 402210, 402350, atg, tag, >, True, True
|
|---|
| 546 | yahN, 402367, 403038, atg, tga, <, True, True
|
|---|
| 547 | yahO, 403185, 403460, atg, taa, >, True, True
|
|---|
| 548 | prpR, 403558, 405144, atg, tga, <, True, True
|
|---|
| 549 | prpB, 405383, 406273, atg, taa, >, True, True
|
|---|
| 550 | prpC, 406429, 407598, atg, taa, >, True, True
|
|---|
| 551 | prpD, 407632, 409083, atg, taa, >, True, True
|
|---|
| 552 | prpE, 409123, 411009, atg, taa, >, True, True
|
|---|
| 553 | Z0431, 411372, 411509, tgc, agg, <, False, False
|
|---|
| 554 | # Start codon reading frame match - shift -4: 411523, gtg: True
|
|---|
| 555 | # Start codon reading frame match - shift 1: 411528, atg: True
|
|---|
| 556 | # Start codon reading frame match - shift 8: 411535, gtg: True
|
|---|
| 557 | # Stop codon reading frame match - shift -8: 411384, taa: True
|
|---|
| 558 | # Stop codon reading frame match - shift -5: 411387, tga: True
|
|---|
| 559 | # Stop codon reading frame match - shift 1: 411393, tag: True
|
|---|
| 560 | codB, 411903, 413162, cgt, ata, >, False, False
|
|---|
| 561 | # Start codon reading frame match - shift 1: 411924, gtg: True
|
|---|
| 562 | # Stop codon reading frame match - shift 1: 413181, taa: True
|
|---|
| 563 | # Matching shift 1
|
|---|
| 564 | codB, 411903, 413162, gtg, taa, >, True, True
|
|---|
| 565 | codA, 413152, 414435, gtg, tga, >, True, True
|
|---|
| 566 | cynR, 414568, 415467, atg, taa, <, True, True
|
|---|
| 567 | cynT, 415577, 416236, gtg, taa, >, True, True
|
|---|
| 568 | cynS, 416267, 416737, atg, tga, >, True, True
|
|---|
| 569 | cynX, 416770, 417924, atg, tga, >, True, True
|
|---|
| 570 | lacA, 418027, 418638, atg, taa, <, True, True
|
|---|
| 571 | lacY, 418704, 419957, atg, taa, <, True, True
|
|---|
| 572 | lacZ, 420009, 423083, atg, taa, <, True, True
|
|---|
| 573 | lacI, 423206, 424288, acc, gag, <, False, False
|
|---|
| 574 | # Start codon reading frame match - shift 5: 424312, gtg: True
|
|---|
| 575 | # Start codon reading frame match - shift 7: 424314, atg: True
|
|---|
| 576 | # Stop codon reading frame match - shift 1: 423228, tga: True
|
|---|
| 577 | Z0442, 424325, 425278, ccc, gcg, <, False, False
|
|---|
| 578 | # Start codon reading frame match - shift 5: 425302, atg: True
|
|---|
| 579 | # Start codon reading frame match - shift 10: 425307, gtg: True
|
|---|
| 580 | # Stop codon reading frame match - shift 2: 424348, tag: True
|
|---|
| 581 | # Stop codon reading frame match - shift 5: 424351, tga: True
|
|---|
| 582 | Z0443, 425298, 426074, aat, cgg, <, False, False
|
|---|
| 583 | # Start codon reading frame match - shift 5: 426098, atg: True
|
|---|
| 584 | # Stop codon reading frame match - shift -6: 425313, taa: True
|
|---|
| 585 | # Stop codon reading frame match - shift 5: 425324, taa: True
|
|---|
| 586 | # Matching shift 5
|
|---|
| 587 | Z0443, 425298, 426074, atg, taa, <, True, True
|
|---|
| 588 | mhpR, 426189, 427061, gtg, tag, <, True, True
|
|---|
| 589 | mhpA, 427213, 428877, atg, tga, >, True, True
|
|---|
| 590 | mhpB, 428879, 429823, atg, tga, >, True, True
|
|---|
| 591 | mhpC, 429778, 430707, gtg, taa, >, True, True
|
|---|
| 592 | mhpD, 430717, 431526, atg, tga, >, True, True
|
|---|
| 593 | mhpF, 431523, 432473, atg, tga, >, True, True
|
|---|
| 594 | mhpE, 432470, 433483, atg, taa, >, True, True
|
|---|
| 595 | mhpT, 433614, 434870, atg, tga, >, True, True
|
|---|
| 596 | yaiL, 434855, 435511, gtg, taa, >, True, True
|
|---|
| 597 | yaiM, 435636, 436469, atg, tga, <, True, True
|
|---|
| 598 | adhC, 436562, 437671, atg, tga, <, True, True
|
|---|
| 599 | yaiN, 437706, 438002, gtg, tag, <, True, True
|
|---|
| 600 | afuC, 438141, 439199, gga, taa, <, False, True
|
|---|
| 601 | # Start codon reading frame match - shift -10: 439213, atg: True
|
|---|
| 602 | # Start codon reading frame match - shift 2: 439225, atg: True
|
|---|
| 603 | afuB, 439199, 441277, gtc, atg, <, False, False
|
|---|
| 604 | # Start codon reading frame match - shift 2: 441303, atg: True
|
|---|
| 605 | # Stop codon reading frame match - shift 2: 439227, taa: True
|
|---|
| 606 | # Matching shift 2
|
|---|
| 607 | afuB, 439199, 441277, atg, taa, <, True, True
|
|---|
| 608 | afuA, 441346, 442377, atg, taa, <, True, True
|
|---|
| 609 | Z0461, 442374, 443678, atg, tga, <, True, True
|
|---|
| 610 | Z0462, 443763, 445304, atg, taa, <, True, True
|
|---|
| 611 | Z0463, 445304, 445933, atg, taa, <, True, True
|
|---|
| 612 | tauA, 446236, 447198, atg, taa, >, True, True
|
|---|
| 613 | tauB, 447211, 447978, atg, tga, >, True, True
|
|---|
| 614 | tauC, 447975, 448802, atg, tga, >, True, True
|
|---|
| 615 | tauD, 448799, 449650, atg, taa, >, True, True
|
|---|
| 616 | hemB, 449757, 450764, tgc, taa, <, False, True
|
|---|
| 617 | # Start codon reading frame match - shift 1: 450791, gtg: True
|
|---|
| 618 | Z0469, 451257, 454199, aat, ggt, >, False, False
|
|---|
| 619 | # Start codon reading frame match - shift -6: 451279, atg: True
|
|---|
| 620 | # Start codon reading frame match - shift 1: 451286, atg: True
|
|---|
| 621 | # Stop codon reading frame match - shift 2: 454227, taa: True
|
|---|
| 622 | yaiV, 454242, 454910, taa, att, >, False, False
|
|---|
| 623 | # Start codon reading frame match - shift 2: 454272, atg: True
|
|---|
| 624 | # Stop codon reading frame match - shift 2: 454938, taa: True
|
|---|
| 625 | # Matching shift 2
|
|---|
| 626 | yaiV, 454242, 454910, atg, taa, >, True, True
|
|---|
| 627 | yaiH, 454911, 456068, ttg, tga, <, False, True
|
|---|
| 628 | sbmA, 456420, 457640, atg, taa, >, True, True
|
|---|
| 629 | yaiW, 457653, 458747, atg, tga, >, True, True
|
|---|
| 630 | Z0475, 458806, 459114, atg, taa, <, True, True
|
|---|
| 631 | Z0476, 459242, 459586, gtg, taa, >, True, True
|
|---|
| 632 | Z0477, 459610, 460704, atg, taa, <, True, True
|
|---|
| 633 | yaiB, 461167, 461427, atg, taa, >, True, True
|
|---|
| 634 | phoA, 461459, 462943, ttg, taa, >, False, True
|
|---|
| 635 | psiF, 463044, 463382, atg, tga, >, True, True
|
|---|
| 636 | yaiC, 463484, 464599, atg, tga, >, True, True
|
|---|
| 637 | proC, 464616, 465425, atg, tga, <, True, True
|
|---|
| 638 | Z0483, 465425, 466003, ttg, taa, >, False, True
|
|---|
| 639 | aroL, 466186, 466710, atg, tga, >, True, True
|
|---|
| 640 | yaiA, 466760, 466951, atg, tga, >, True, True
|
|---|
| 641 | aroM, 467209, 467886, atg, taa, >, True, True
|
|---|
| 642 | yaiE, 467958, 468242, atg, taa, >, True, True
|
|---|
| 643 | Z0489, 470384, 470665, ttg, tga, >, False, True
|
|---|
| 644 | # Start codon reading frame match - shift -10: 470404, gtg: True
|
|---|
| 645 | # Start codon reading frame match - shift -5: 470409, gtg: True
|
|---|
| 646 | Z0491, 470662, 471111, atg, tag, >, True, True
|
|---|
| 647 | yaiD, 471196, 472107, atg, taa, <, True, True
|
|---|
| 648 | yajF, 472094, 473140, ttg, taa, >, False, True
|
|---|
| 649 | araJ, 473283, 474467, atg, tag, <, True, True
|
|---|
| 650 | sbcC, 474593, 477736, atg, taa, <, True, True
|
|---|
| 651 | sbcD, 477733, 478935, atg, tga, <, True, True
|
|---|
| 652 | phoB, 479125, 479814, atg, taa, >, True, True
|
|---|
| 653 | phoR, 479872, 481167, gtg, taa, >, True, True
|
|---|
| 654 | brnQ, 481574, 482893, atg, taa, >, True, True
|
|---|
| 655 | proY, 482969, 484342, atg, taa, >, True, True
|
|---|
| 656 | malZ, 484498, 486315, atg, aac, >, True, False
|
|---|
| 657 | # Stop codon reading frame match - shift -2: 486341, tga: True
|
|---|
| 658 | # Stop codon reading frame match - shift 3: 486346, taa: True
|
|---|
| 659 | Z0502, 486503, 487948, gat, aaa, >, False, False
|
|---|
| 660 | # Start codon reading frame match - shift -10: 486523, gtg: True
|
|---|
| 661 | # Start codon reading frame match - shift 3: 486536, atg: True
|
|---|
| 662 | # Stop codon reading frame match - shift -4: 487972, taa: True
|
|---|
| 663 | # Stop codon reading frame match - shift 3: 487979, tag: True
|
|---|
| 664 | # Stop codon reading frame match - shift 6: 487982, tga: True
|
|---|
| 665 | yajB, 487969, 488550, aat, aac, <, False, False
|
|---|
| 666 | # Start codon reading frame match - shift 3: 488581, atg: True
|
|---|
| 667 | # Stop codon reading frame match - shift 3: 488002, tga: True
|
|---|
| 668 | # Matching shift 3
|
|---|
| 669 | yajB, 487969, 488550, atg, tga, <, True, True
|
|---|
| 670 | queA, 488643, 489713, atg, taa, >, True, True
|
|---|
| 671 | tgt, 489768, 490895, atg, taa, >, True, True
|
|---|
| 672 | yajC, 490918, 491250, atg, taa, >, True, True
|
|---|
| 673 | secD, 491278, 493125, gtg, tga, >, True, True
|
|---|
| 674 | secF, 493136, 494107, gtg, taa, >, True, True
|
|---|
| 675 | Z0509, 494258, 494500, atg, taa, >, True, True
|
|---|
| 676 | Z0510, 494493, 494774, gtg, taa, >, True, True
|
|---|
| 677 | yajD, 494862, 495209, atg, tga, >, True, True
|
|---|
| 678 | tsx, 495386, 496270, tga, tga, <, False, True
|
|---|
| 679 | # Start codon reading frame match - shift 1: 496302, atg: True
|
|---|
| 680 | yajI, 496569, 497168, tgc, aaa, <, False, False
|
|---|
| 681 | # Start codon reading frame match - shift 1: 497200, atg: True
|
|---|
| 682 | # Stop codon reading frame match - shift -7: 496595, tag: True
|
|---|
| 683 | # Stop codon reading frame match - shift 1: 496603, taa: True
|
|---|
| 684 | # Matching shift 1
|
|---|
| 685 | yajI, 496569, 497168, atg, taa, <, True, True
|
|---|
| 686 | ybaD, 497259, 497708, atg, taa, >, True, True
|
|---|
| 687 | ribD, 497712, 498815, gtg, tga, >, True, True
|
|---|
| 688 | Z0516, 498904, 499374, atg, tga, >, True, True
|
|---|
| 689 | nusB, 499394, 499813, gtg, taa, >, True, True
|
|---|
| 690 | thiL, 499891, 500868, atg, taa, >, True, True
|
|---|
| 691 | pgpA, 500846, 501361, atg, taa, >, True, True
|
|---|
| 692 | Z0521, 501539, 503110, atg, tga, <, True, True
|
|---|
| 693 | yajO, 503341, 504315, atg, taa, <, True, True
|
|---|
| 694 | dxs, 504370, 506232, atg, taa, <, True, True
|
|---|
| 695 | ispA, 506257, 507156, atg, taa, <, True, True
|
|---|
| 696 | xseB, 507156, 507398, atg, taa, <, True, True
|
|---|
| 697 | yajK, 507604, 509052, atg, taa, >, True, True
|
|---|
| 698 | thiJ, 509106, 509702, gtg, tag, <, True, True
|
|---|
| 699 | apbA, 509659, 510570, atg, tag, <, True, True
|
|---|
| 700 | yajQ, 510720, 511229, atg, taa, >, True, True
|
|---|
| 701 | yajR, 511357, 512727, gtg, taa, <, True, True
|
|---|
| 702 | cyoE, 512870, 513760, atg, taa, <, True, True
|
|---|
| 703 | cyoD, 513772, 514101, atg, taa, <, True, True
|
|---|
| 704 | cyoC, 514101, 514715, atg, taa, <, True, True
|
|---|
| 705 | cyoB, 514705, 516696, atg, tga, <, True, True
|
|---|
| 706 | cyoA, 516718, 517665, atg, taa, <, True, True
|
|---|
| 707 | ampG, 518125, 519600, atg, taa, <, True, True
|
|---|
| 708 | yajG, 519644, 520324, atg, taa, <, True, True
|
|---|
| 709 | bolA, 520494, 520844, atg, taa, >, True, True
|
|---|
| 710 | tig, 521188, 522486, atg, taa, >, True, True
|
|---|
| 711 | clpP, 522731, 523354, atg, tga, >, True, True
|
|---|
| 712 | clpX, 523480, 524754, atg, taa, >, True, True
|
|---|
| 713 | lon, 524897, 527296, gtg, tag, >, True, True
|
|---|
| 714 | hupB, 527505, 527777, gtg, taa, >, True, True
|
|---|
| 715 | ybaU, 527969, 529840, atg, taa, >, True, True
|
|---|
| 716 | ybaV, 529992, 530363, atg, taa, >, True, True
|
|---|
| 717 | ybaW, 530469, 530867, atg, taa, >, True, True
|
|---|
| 718 | ybaX, 530919, 531614, atg, taa, <, True, True
|
|---|
| 719 | ybaE, 531679, 533379, atg, tga, <, True, True
|
|---|
| 720 | cof, 533467, 534297, gtg, taa, >, True, True
|
|---|
| 721 | ybaO, 534449, 534907, atg, taa, >, True, True
|
|---|
| 722 | mdlA, 534937, 536709, gtg, tag, >, True, True
|
|---|
| 723 | mdlB, 536702, 538483, atg, tga, >, True, True
|
|---|
| 724 | glnK, 538664, 539002, atg, taa, >, True, True
|
|---|
| 725 | amtB, 539032, 540318, atg, ata, >, True, False
|
|---|
| 726 | # Stop codon reading frame match - shift -6: 540344, taa: True
|
|---|
| 727 | # Stop codon reading frame match - shift 1: 540351, taa: True
|
|---|
| 728 | tesB, 540367, 541227, tga, aaa, <, False, False
|
|---|
| 729 | # Start codon reading frame match - shift 1: 541260, atg: True
|
|---|
| 730 | # Stop codon reading frame match - shift -7: 540394, tag: True
|
|---|
| 731 | # Stop codon reading frame match - shift 1: 540402, taa: True
|
|---|
| 732 | # Matching shift 1
|
|---|
| 733 | tesB, 540367, 541227, atg, taa, <, True, True
|
|---|
| 734 | ybaY, 541445, 542017, atg, taa, >, True, True
|
|---|
| 735 | ybaZ, 542050, 542421, atg, taa, <, True, True
|
|---|
| 736 | ffs, 542492, 542629, gcg, ccc, >, False, False
|
|---|
| 737 | # Start codon reading frame match - shift -10: 542517, atg: True
|
|---|
| 738 | ybaA, 542740, 543093, atg, tag, >, True, True
|
|---|
| 739 | ylaB, 543135, 544691, atg, tga, <, True, True
|
|---|
| 740 | ylaC, 544849, 545358, gtg, taa, <, True, True
|
|---|
| 741 | ylaD, 545435, 545986, atg, taa, <, True, True
|
|---|
| 742 | hha, 546158, 546376, atg, taa, <, True, True
|
|---|
| 743 | ybaJ, 546402, 546776, atg, tag, <, True, True
|
|---|
| 744 | acrB, 547322, 550471, atg, tga, <, True, True
|
|---|
| 745 | acrA, 550494, 551687, atg, taa, <, True, True
|
|---|
| 746 | acrR, 551829, 552476, atg, taa, >, True, True
|
|---|
| 747 | aefA, 552604, 555966, atg, taa, >, True, True
|
|---|
| 748 | Z0583, 556005, 556169, atg, taa, <, True, True
|
|---|
| 749 | priC, 556183, 556710, tga, tag, <, False, True
|
|---|
| 750 | # Start codon reading frame match - shift 1: 556744, gtg: True
|
|---|
| 751 | ybaN, 556780, 557157, tat, ctg, >, False, False
|
|---|
| 752 | # Start codon reading frame match - shift 1: 556816, atg: True
|
|---|
| 753 | # Stop codon reading frame match - shift 1: 557191, tga: True
|
|---|
| 754 | # Matching shift 1
|
|---|
| 755 | ybaN, 556780, 557157, atg, tga, >, True, True
|
|---|
| 756 | apt, 557310, 557861, atg, taa, >, True, True
|
|---|
| 757 | dnaX, 557990, 559921, atg, tga, >, True, True
|
|---|
| 758 | ybaB, 559974, 560303, atg, tga, >, True, True
|
|---|
| 759 | recR, 560303, 560908, atg, taa, >, True, True
|
|---|
| 760 | htpG, 561018, 562892, atg, cct, >, True, False
|
|---|
| 761 | # Stop codon reading frame match - shift 2: 562928, tga: True
|
|---|
| 762 | # Stop codon reading frame match - shift 7: 562933, taa: True
|
|---|
| 763 | adk, 563073, 563717, caa, gct, >, False, False
|
|---|
| 764 | # Start codon reading frame match - shift 2: 563111, atg: True
|
|---|
| 765 | # Stop codon reading frame match - shift 2: 563753, taa: True
|
|---|
| 766 | # Matching shift 2
|
|---|
| 767 | adk, 563073, 563717, atg, taa, >, True, True
|
|---|
| 768 | hemH, 563849, 564811, atg, taa, >, True, True
|
|---|
| 769 | ybaC, 564808, 565767, atg, tag, <, True, True
|
|---|
| 770 | gsk, 565919, 567223, atg, taa, >, True, True
|
|---|
| 771 | ybaL, 567356, 569032, atg, taa, <, True, True
|
|---|
| 772 | fsr, 569269, 570489, tgg, gat, <, False, False
|
|---|
| 773 | # Start codon reading frame match - shift -9: 570516, gtg: True
|
|---|
| 774 | # Start codon reading frame match - shift -5: 570520, atg: True
|
|---|
| 775 | # Start codon reading frame match - shift 1: 570526, atg: True
|
|---|
| 776 | # Stop codon reading frame match - shift 1: 569308, tga: True
|
|---|
| 777 | # Stop codon reading frame match - shift 8: 569315, taa: True
|
|---|
| 778 | ushA, 570707, 572359, tat, gta, >, False, False
|
|---|
| 779 | # Start codon reading frame match - shift 1: 570746, atg: True
|
|---|
| 780 | # Stop codon reading frame match - shift -10: 572385, tga: True
|
|---|
| 781 | # Stop codon reading frame match - shift 1: 572396, taa: True
|
|---|
| 782 | # Matching shift 1
|
|---|
| 783 | ushA, 570707, 572359, atg, taa, >, True, True
|
|---|
| 784 | ybaK, 572396, 572875, atg, taa, <, True, True
|
|---|
| 785 | ybaP, 573079, 573873, atg, taa, <, True, True
|
|---|
| 786 | ybaQ, 573957, 574352, atg, taa, >, True, True
|
|---|
| 787 | ybaR, 574567, 577071, atg, taa, <, True, True
|
|---|
| 788 | ybaS, 577333, 578265, atg, tga, >, True, True
|
|---|
| 789 | ybaT, 578268, 579560, atg, taa, >, True, True
|
|---|
| 790 | Z0608, 579898, 581253, atg, taa, >, True, True
|
|---|
| 791 | Z0609, 581356, 585741, atg, tta, >, True, False
|
|---|
| 792 | # Stop codon reading frame match - shift 1: 585779, tag: True
|
|---|
| 793 | Z0615, 585949, 601515, ggt, tga, >, False, True
|
|---|
| 794 | # Start codon reading frame match - shift 1: 585989, gtg: True
|
|---|
| 795 | Z0634, 601519, 603681, tgg, ggt, >, False, False
|
|---|
| 796 | # Start codon reading frame match - shift -4: 601554, atg: True
|
|---|
| 797 | # Start codon reading frame match - shift -1: 601557, gtg: True
|
|---|
| 798 | # Start codon reading frame match - shift 2: 601560, gtg: True
|
|---|
| 799 | # Stop codon reading frame match - shift -5: 603713, taa: True
|
|---|
| 800 | Z0635, 603678, 604853, ggg, tgc, >, False, False
|
|---|
| 801 | ybbI, 604925, 605257, aga, atc, >, False, False
|
|---|
| 802 | # Start codon reading frame match - shift -6: 604958, atg: True
|
|---|
| 803 | Z0638, 605461, 605883, ctc, agg, <, False, False
|
|---|
| 804 | # Start codon reading frame match - shift 8: 605928, atg: True
|
|---|
| 805 | Z0639, 605968, 606984, aaa, tcc, <, False, False
|
|---|
| 806 | # Stop codon reading frame match - shift -9: 605998, taa: True
|
|---|
| 807 | Z0640, 607351, 607713, gga, gcc, >, False, False
|
|---|
| 808 | # Stop codon reading frame match - shift -9: 607741, tga: True
|
|---|
| 809 | # Stop codon reading frame match - shift -5: 607745, taa: True
|
|---|
| 810 | ybbJ, 607892, 608350, aat, tga, <, False, True
|
|---|
| 811 | # Start codon reading frame match - shift 8: 608395, atg: True
|
|---|
| 812 | ybbK, 608347, 609264, tat, ata, <, False, False
|
|---|
| 813 | # Stop codon reading frame match - shift -1: 608385, tag: True
|
|---|
| 814 | # Stop codon reading frame match - shift 2: 608388, taa: True
|
|---|
| 815 | ybbL, 609410, 610087, agg, atg, >, False, False
|
|---|
| 816 | # Stop codon reading frame match - shift 1: 610125, tga: True
|
|---|
| 817 | ybbM, 610047, 610853, act, tga, >, False, True
|
|---|
| 818 | # Start codon reading frame match - shift -8: 610078, gtg: True
|
|---|
| 819 | ybbN, 610916, 611806, aat, tga, <, False, True
|
|---|
| 820 | ybbO, 611831, 612640, agc, gcg, <, False, False
|
|---|
| 821 | # Stop codon reading frame match - shift -7: 611863, taa: True
|
|---|
| 822 | # Stop codon reading frame match - shift 6: 611876, tga: True
|
|---|
| 823 | tesA, 612630, 613256, caa, aga, <, False, False
|
|---|
| 824 | # Start codon reading frame match - shift -5: 613288, atg: True
|
|---|
| 825 | # Start codon reading frame match - shift 8: 613301, atg: True
|
|---|
| 826 | # Stop codon reading frame match - shift -6: 612663, tga: True
|
|---|
| 827 | ybbA, 613224, 613910, agg, agg, >, False, False
|
|---|
| 828 | ybbP, 613907, 616321, cag, agt, >, False, False
|
|---|
| 829 | Z0651, 616751, 620947, ggg, gct, >, False, False
|
|---|
| 830 | ybbD, 620928, 621188, ggc, tta, >, False, False
|
|---|
| 831 | Z0654, 621227, 621376, aaa, gca, >, False, False
|
|---|
| 832 | # Stop codon reading frame match - shift -9: 621404, taa: True
|
|---|
