Initial HMM DiscreteEmissionHMM(N=2, M=5) state 0 (initial=0.90) Emissions: 0.10, 0.10, 0.10, 0.10, 0.60 Transitions: ->0 (0.60), ->1 (0.40) state 1 (initial=0.10) Emissions: 0.20, 0.30, 0.30, 0.20, 0.10 Transitions: ->0 (0.30), ->1 (0.70) Observation sequence : nngaagtgactttggngagc Observations : nngaagtgactttggngagc thrL, 190, 273, atg, tga, >, True, True thrA, 354, 2816, atg, tga, >, True, True thrB, 2818, 3750, atg, taa, >, True, True thrC, 3751, 5037, atg, taa, >, True, True Z0005, 5251, 5547, gtg, taa, >, True, True yaaA, 5700, 6476, atg, taa, <, True, True yaaJ, 6546, 7976, atg, taa, <, True, True talB, 8255, 9208, atg, taa, >, True, True mog, 9323, 9910, atg, taa, >, True, True yaaH, 9945, 10511, atg, taa, <, True, True Z0011, 10660, 11373, atg, tga, <, True, True htgA, 10742, 11362, ctg, taa, >, False, True yaaI, 11399, 11803, atg, taa, <, True, True dnaK, 12180, 14096, atg, taa, >, True, True dnaJ, 14185, 15315, atg, taa, >, True, True gef, 15419, 15628, tgc, taa, <, False, True # Start codon reading frame match - shift -10: 15615, atg: True # Start codon reading frame match - shift 1: 15626, atg: True nhaA, 16157, 17323, agt, ttg, >, False, False # Start codon reading frame match - shift 1: 16157, gtg: True # Stop codon reading frame match - shift 1: 17321, tga: True # Matching shift 1 nhaA, 16157, 17323, gtg, tga, >, True, True nhaR, 17383, 18288, atg, taa, >, True, True Z0020, 18326, 18949, atg, taa, <, True, True Z0021, 18960, 19286, atg, taa, <, True, True Z0022, 19299, 21749, atg, taa, <, True, True Z0023, 21762, 22445, gtg, taa, <, True, True Z0024, 22495, 23028, atg, taa, <, True, True Z0025, 23330, 24751, atg, taa, <, True, True rpsT, 25221, 25484, ttg, taa, <, False, True Z0028, 25587, 25811, atg, tga, >, True, True ribF, 25819, 26760, atg, taa, >, True, True ileS, 26803, 29619, atg, ctg, >, True, False # Stop codon reading frame match - shift -9: 29608, taa: True # Stop codon reading frame match - shift 1: 29618, tga: True # Stop codon reading frame match - shift 4: 29621, tga: True lspA, 29619, 30113, gat, ata, >, False, False # Start codon reading frame match - shift 1: 29620, atg: True # Stop codon reading frame match - shift 1: 30112, taa: True # Stop codon reading frame match - shift 4: 30115, taa: True slpA, 30201, 30650, cat, gta, >, False, False # Start codon reading frame match - shift 1: 30202, atg: True # Stop codon reading frame match - shift 1: 30649, taa: True # Matching shift 1 slpA, 30201, 30650, atg, taa, >, True, True lytB, 30652, 31602, atg, taa, >, True, True yaaF, 31668, 32582, atg, taa, >, True, True dapB, 32749, 33570, atg, taa, >, True, True carA, 34026, 35174, ttg, taa, >, False, True # Start codon reading frame match - shift -5: 34022, gtg: True carB, 35192, 38413, atg, taa, >, True, True Z0039, 38421, 38639, atg, tga, <, True, True Z0040, 38569, 39069, gtg, taa, >, True, True caiE, 39188, 39799, gtg, tga, <, True, True caiD, 39784, 40677, atg, taa, <, True, True caiC, 40678, 42246, atg, taa, <, True, True caiB, 42305, 43522, atg, taa, <, True, True caiA, 43651, 44793, atg, taa, <, True, True caiT, 44824, 46338, aag, taa, <, False, True # Start codon reading frame match - shift -4: 46333, atg: True # Start codon reading frame match - shift 3: 46340, atg: True fixA, 46781, 47587, gat, att, >, False, False # Start codon reading frame match - shift 3: 46785, atg: True # Stop codon reading frame match - shift 3: 47589, taa: True # Matching shift 3 fixA, 46781, 47587, atg, taa, >, True, True fixB, 47602, 48543, atg, tga, >, True, True fixC, 48594, 49880, atg, atg, >, True, False # Stop codon reading frame match - shift -10: 49872, tga: True # Stop codon reading frame match - shift 1: 49883, tga: True fixX, 49877, 50164, tat, ctg, >, False, False # Start codon reading frame match - shift -10: 49871, gtg: True # Start codon reading frame match - shift 1: 49882, atg: True # Stop codon reading frame match - shift 1: 50167, tga: True # Matching shift 1 fixX, 49877, 50164, atg, tga, >, True, True yaaU, 50222, 51553, atg, taa, >, True, True yabF, 51661, 52191, atg, tag, >, True, True kefC, 52184, 54046, atg, cta, >, True, False # Stop codon reading frame match - shift 1: 54050, taa: True # Stop codon reading frame match - shift 4: 54053, taa: True Z0055, 54238, 54717, aat, gta, >, False, False # Start codon reading frame match - shift 1: 54244, atg: True # Stop codon reading frame match - shift 1: 54721, taa: True # Matching shift 1 Z0055, 54238, 54717, atg, taa, >, True, True Z0056, 54803, 55036, atg, tag, >, True, True Z0057, 55039, 55353, atg, taa, >, True, True apaH, 55350, 56198, atg, taa, <, True, True apaG, 56205, 56582, atg, taa, <, True, True ksgA, 56585, 57406, atg, taa, <, True, True pdxA, 57403, 58392, atg, tga, <, True, True surA, 58392, 59678, atg, taa, <, True, True imp, 59731, 62085, atg, tga, <, True, True yabH, 62340, 63155, atg, tga, >, True, True Z0065, 63450, 64202, atg, tga, >, True, True yabO, 64620, 65279, tgg, aac, <, False, False # Start codon reading frame match - shift -5: 65278, atg: True # Start codon reading frame match - shift 1: 65284, atg: True # Stop codon reading frame match - shift 1: 64627, taa: True # Matching shift 1 yabO, 64620, 65279, atg, taa, <, True, True Z0067, 65291, 68197, atg, taa, <, True, True polB, 68361, 70712, gtg, tga, <, True, True araD, 70787, 71482, atg, taa, <, True, True araA, 71682, 73184, atg, taa, <, True, True araB, 73195, 74895, atg, taa, <, True, True araC, 75234, 76112, atg, taa, >, True, True yabI, 76198, 76962, atg, tag, >, True, True yabJ, 77049, 77747, atg, taa, <, True, True yabK, 77731, 79341, atg, tga, <, True, True tbpA, 79317, 80300, gtg, taa, <, True, True Z0078, 80672, 81241, atg, tga, >, True, True yabN, 81470, 83128, atg, tag, <, True, True leuD, 83456, 84061, atg, tag, <, True, True leuC, 84072, 85472, atg, taa, <, True, True leuB, 85475, 86569, gtg, taa, <, True, True leuA, 86566, 88137, atg, tga, <, True, True leuL, 88230, 88316, atg, taa, <, True, True leuO, 88956, 89918, gtg, taa, >, True, True ilvI, 90152, 91960, atg, tga, >, True, True ilvH, 91963, 92454, atg, tga, >, True, True fruL, 92466, 92552, atg, taa, >, True, True fruR, 92634, 93638, gtg, taa, >, True, True yabB, 94240, 94698, atg, taa, >, True, True yabC, 94700, 95641, atg, tga, >, True, True ftsL, 95638, 96003, atg, taa, >, True, True ftsI, 96019, 97785, atg, taa, >, True, True murE, 97772, 99259, gtg, cat, >, True, False # Stop codon reading frame match - shift -6: 99258, tga: True # Stop codon reading frame match - shift 2: 99266, tga: True # Stop codon reading frame match - shift 6: 99270, tag: True murF, 99256, 100614, gca, gtt, >, False, False # Start codon reading frame match - shift -6: 99257, gtg: True # Start codon reading frame match - shift 2: 99265, atg: True # Stop codon reading frame match - shift 2: 100621, tag: True # Matching shift 2 murF, 99256, 100614, atg, tag, >, True, True mraY, 100608, 101690, atg, taa, >, True, True murD, 101693, 103009, atg, tga, >, True, True ftsW, 103009, 104253, atg, tga, >, True, True murG, 104250, 105317, atg, taa, >, True, True murC, 105371, 106846, atg, ctg, >, True, False # Stop codon reading frame match - shift -3: 106850, tga: True # Stop codon reading frame match - shift 1: 106854, tga: True # Stop codon reading frame match - shift 4: 106857, taa: True ddlB, 106839, 107759, cat, cta, >, False, False # Start codon reading frame match - shift 1: 106849, atg: True # Stop codon reading frame match - shift 1: 107767, taa: True # Matching shift 1 ddlB, 106839, 107759, atg, taa, >, True, True ftsQ, 107761, 108591, atg, tga, >, True, True ftsA, 108588, 109850, atg, taa, >, True, True ftsZ, 109911, 111062, atg, taa, >, True, True lpxC, 111163, 112080, atg, taa, >, True, True yacA, 112236, 112823, gtg, taa, >, True, True secA, 112885, 115590, atg, taa, >, True, True mutT, 115650, 116048, atg, taa, >, True, True Z0110, 116054, 116188, gtg, tga, <, True, True yacG, 116139, 116336, atg, tga, <, True, True yacF, 116346, 117089, atg, taa, <, True, True yacE, 117089, 117709, atg, taa, <, True, True guaC, 117934, 118977, atg, taa, >, True, True Z0115, 118897, 119004, gtg, tga, <, True, True hofC, 119012, 120214, atg, taa, <, True, True hofB, 120204, 121589, atg, taa, <, True, True ppdD, 121599, 122039, atg, taa, <, True, True nadC, 122242, 123135, atg, tag, <, True, True ampD, 123223, 123774, atg, tga, >, True, True ampE, 123771, 124625, atg, taa, >, True, True aroP, 124668, 126041, atg, taa, <, True, True pdhR, 126582, 127346, atg, tag, >, True, True aceE, 127507, 130170, atg, taa, >, True, True aceF, 130185, 132077, atg, taa, >, True, True lpdA, 132285, 133709, atg, taa, >, True, True yacH, 133780, 135633, atg, taa, <, True, True acnB, 135988, 138585, gtg, taa, >, True, True yacL, 138713, 139123, atg, taa, >, True, True speD, 139161, 139955, ttg, taa, <, False, True speE, 139971, 140837, atg, taa, <, True, True yacC, 140943, 141413, ttg, taa, <, False, True yacK, 141456, 143006, atg, taa, >, True, True gcd, 143208, 145598, atg, taa, <, True, True hpt, 145792, 146340, atg, taa, >, True, True yadF, 146381, 147043, atg, taa, <, True, True yadG, 147152, 148078, atg, tga, >, True, True yadH, 148075, 148845, atg, taa, >, True, True yadI, 148950, 149390, atg, tta, >, True, False # Stop codon reading frame match - shift -6: 149392, tga: True # Stop codon reading frame match - shift 1: 149399, taa: True yadE, 149454, 150683, cat, ata, >, False, False # Start codon reading frame match - shift -10: 149454, gtg: True # Start codon reading frame match - shift 1: 149465, atg: True # Stop codon reading frame match - shift 1: 150692, taa: True # Matching shift 1 yadE, 149454, 150683, atg, taa, >, True, True panD, 150687, 151067, atg, tga, <, True, True yadD, 151341, 152237, atg, taa, >, True, True panC, 152536, 153387, gtg, taa, <, True, True panB, 153399, 154193, atg, taa, <, True, True yadC, 154328, 155437, atg, taa, <, True, True yadK, 155449, 156039, atg, taa, <, True, True yadL, 156060, 156665, atg, taa, <, True, True yadM, 156680, 157240, atg, taa, <, True, True htrE, 157242, 159740, tgg, taa, <, False, True # Start codon reading frame match - shift -6: 159743, atg: True # Start codon reading frame match - shift 1: 159750, gtg: True ecpD, 159884, 160615, tgc, aaa, <, False, False # Start codon reading frame match - shift -5: 160619, atg: True # Start codon reading frame match - shift 1: 160625, gtg: True # Stop codon reading frame match - shift -6: 159889, taa: True # Stop codon reading frame match - shift 1: 159896, taa: True # Matching shift 1 ecpD, 159884, 160615, gtg, taa, <, True, True yadN, 160696, 161301, atg, taa, <, True, True folK, 161573, 162055, atg, tag, <, True, True pcnB, 162052, 163416, gct, tga, <, False, True # Start codon reading frame match - shift 2: 163428, gtg: True yadB, 163509, 164435, gct, agc, <, False, False # Start codon reading frame match - shift 2: 164447, atg: True # Stop codon reading frame match - shift -9: 163512, tag: True # Stop codon reading frame match - shift -5: 163516, tga: True # Stop codon reading frame match - shift 2: 163523, tga: True # Matching shift 2 yadB, 163509, 164435, atg, tga, <, True, True dksA, 164472, 164927, atg, taa, <, True, True sfsA, 165105, 165809, atg, tag, <, True, True yadP, 165824, 166363, gtg, taa, <, True, True hrpB, 166383, 168857, atg, taa, >, True, True mrcB, 169053, 171587, atg, taa, >, True, True fhuA, 171807, 174050, atg, taa, >, True, True fhuC, 174101, 174898, atg, tga, >, True, True fhuD, 174898, 175788, atg, tga, >, True, True fhuB, 175785, 177767, gtg, taa, >, True, True hemL, 177802, 179082, atg, tga, <, True, True yadQ, 179307, 180728, atg, ttg, >, True, False # Stop codon reading frame match - shift 1: 180741, tga: True yadR, 180810, 181154, tat, cta, >, False, False # Start codon reading frame match - shift 1: 180825, atg: True # Start codon reading frame match - shift 5: 180829, gtg: True # Start codon reading frame match - shift 8: 180832, atg: True # Stop codon reading frame match - shift -6: 181160, tag: True # Stop codon reading frame match - shift 1: 181167, taa: True yadS, 181201, 181824, tgc, gaa, <, False, False # Start codon reading frame match - shift 1: 181837, atg: True # Stop codon reading frame match - shift 1: 181216, tga: True # Matching shift 1 yadS, 181201, 181824, atg, tga, <, True, True yadT, 181862, 182662, atg, tag, <, True, True pfs, 182655, 183353, atg, taa, <, True, True dgt, 183437, 184954, atg, taa, >, True, True htrA, 185084, 186508, atg, taa, >, True, True yaeG, 186645, 187820, gtg, tag, >, True, True yaeH, 187909, 188295, atg, taa, <, True, True dapD, 188610, 189434, atg, taa, <, True, True glnD, 189465, 192137, atg, tga, <, True, True map, 192199, 192993, atg, taa, <, True, True rpsB, 193361, 194086, atg, taa, >, True, True tsf, 194344, 195195, atg, taa, >, True, True pyrH, 195342, 196067, atg, taa, >, True, True frr, 196217, 196774, gtg, tga, >, True, True yaeM, 196866, 198062, atg, tga, >, True, True yaeS, 198248, 199009, gtg, tga, >, True, True cdsA, 199130, 199879, atg, taa, >, True, True yaeL, 199891, 201243, atg, tga, >, True, True yaeT, 201273, 203705, atg, taa, >, True, True hlpA, 203826, 204311, gtg, taa, >, True, True lpxD, 204315, 205340, atg, taa, >, True, True fabZ, 205445, 205900, ttg, tga, >, False, True lpxA, 205904, 206692, gtg, taa, >, True, True lpxB, 206692, 207840, atg, tga, >, True, True rnhB, 207837, 208433, atg, tga, >, True, True dnaE, 208470, 211952, atg, taa, >, True, True accA, 211965, 212924, atg, taa, >, True, True ldcC, 213023, 215164, atg, taa, >, True, True yaeR, 215194, 215610, gtg, taa, >, True, True mesJ, 215675, 216970, atg, tag, >, True, True yaeO, 217023, 217283, atg, tga, <, True, True Z0202, 217636, 218094, atg, tag, >, True, True yaeJ, 218178, 218588, atg, taa, >, True, True cutF, 218602, 219312, atg, taa, >, True, True yaeF, 219512, 220336, atg, tga, <, True, True proS, 220389, 222107, atg, tga, <, True, True Z0207, 222218, 222925, atg, taa, <, True, True rcsF, 222922, 223326, atg, tga, <, True, True yaeC, 223444, 224259, atg, taa, <, True, True yaeE, 224299, 224952, atg, taa, <, True, True abc, 224945, 225976, atg, tga, <, True, True yaeD, 226164, 226739, gtg, tga, >, True, True rrsH, 227103, 228644, aaa, tta, >, False, False # Stop codon reading frame match - shift 6: 228663, taa: True ileV, 228713, 228789, agg, cca, >, False, False alaV, 228832, 228907, ggg, cca, >, False, False # Start codon reading frame match - shift -7: 228840, atg: True # Start codon reading frame match - shift -2: 228845, atg: True # Stop codon reading frame match - shift -8: 228912, tag: True # Stop codon reading frame match - shift 9: 228929, tag: True rrlH, 229091, 231993, ggt, cct, >, False, False # Start codon reading frame match - shift -4: 229102, gtg: True # Stop codon reading frame match - shift -10: 231996, tga: True # Stop codon reading frame match - shift -3: 232003, taa: True rrfH, 232086, 232205, ttg, gca, >, False, False # Stop codon reading frame match - shift 9: 232227, taa: True aspU, 232258, 232334, tgg, gcc, >, False, False # Start codon reading frame match - shift -1: 232272, gtg: True # Stop codon reading frame match - shift 9: 232356, taa: True yafB, 232497, 233300, tat, tta, >, False, False # Start codon reading frame match - shift 1: 232513, atg: True # Stop codon reading frame match - shift -9: 233304, tga: True # Stop codon reading frame match - shift 1: 233314, taa: True # Matching shift 1 yafB, 232497, 233300, atg, taa, >, True, True yafC, 233297, 234211, atg, taa, <, True, True yafD, 234452, 235252, gtg, taa, >, True, True Z0233, 235330, 236100, atg, taa, >, True, True dniR, 236148, 237506, atg, tga, <, True, True gloB, 237578, 238333, atg, tga, <, True, True yafS, 238349, 239089, gtg, taa, >, True, True rnhA, 239086, 239553, atg, taa, <, True, True dnaQ, 239618, 240349, atg, taa, >, True, True aspV, 240482, 240558, gga, cca, >, False, False Z0243, 240887, 241687, atg, taa, >, True, True Z0244, 241872, 242168, atg, taa, <, True, True Z0245, 242165, 242620, atg, tga, <, True, True Z0246, 242617, 243213, atg, tga, <, True, True Z0247, 243292, 243513, atg, taa, <, True, True Z0248, 243534, 244013, atg, taa, <, True, True Z0249, 243979, 245478, tgt, tga, <, False, True # Start codon reading frame match - shift -1: 245491, gtg: True # Start codon reading frame match - shift 1: 245493, gtg: True Z0250, 245399, 248833, tgc, gag, <, False, False # Stop codon reading frame match - shift 1: 245416, tga: True Z0251, 248970, 249764, tga, aaa, <, False, False # Start codon reading frame match - shift 1: 249779, gtg: True # Stop codon reading frame match - shift 1: 248987, taa: True # Matching shift 1 Z0251, 248970, 249764, gtg, taa, <, True, True Z0252, 249761, 250381, atg, tga, <, True, True Z0253, 250386, 251129, atg, taa, <, True, True Z0254, 251126, 253897, atg, tga, <, True, True Z0255, 253906, 254667, atg, taa, <, True, True Z0256, 254672, 256003, atg, taa, <, True, True Z0257, 256006, 256530, atg, taa, <, True, True Z0258, 256527, 257828, atg, tga, <, True, True Z0259, 257832, 258914, atg, taa, <, True, True Z0260, 258878, 260728, tgg, tga, <, False, True # Start codon reading frame match - shift 1: 260744, atg: True Z0261, 260732, 261145, tga, gac, <, False, False # Start codon reading frame match - shift 1: 261161, atg: True # Stop codon reading frame match - shift 1: 260750, tga: True # Matching shift 1 Z0261, 260732, 261145, atg, tga, <, True, True Z0262, 261236, 262627, atg, tag, <, True, True Z0263, 262678, 262902, atg, tga, <, True, True Z0264, 262937, 263437, atg, taa, <, True, True Z0265, 263864, 264007, atg, tag, >, True, True Z0266, 264134, 264652, atg, taa, >, True, True Z0267, 264862, 267003, atg, tga, >, True, True Z0268, 267079, 271293, atg, tag, >, True, True Z0269, 271296, 271907, atg, tag, >, True, True Z0271, 272653, 273789, atg, taa, >, True, True Z0272, 273792, 275552, ttg, tag, >, False, True Z0273, 275640, 275777, gtg, taa, <, True, True Z0274, 275754, 276017, atg, taa, >, True, True Z0275, 276198, 277370, gtg, taa, >, True, True yafV, 277488, 278258, gtg, tga, <, True, True ykfE, 278412, 278885, atg, taa, >, True, True yafH, 278928, 281408, gtg, taa, <, True, True gmhA, 281612, 282190, atg, taa, >, True, True yafJ, 282295, 283062, atg, tga, >, True, True yafK, 283033, 283773, atg, taa, <, True, True Z0284, 283929, 284132, atg, taa, <, True, True dinJ, 284208, 284468, atg, taa, <, True, True yafL, 284678, 285427, atg, tag, >, True, True yafM, 285603, 285899, atg, tag, >, True, True fhiA, 286245, 287984, atg, tga, <, True, True mbhA, 287929, 288714, gtg, taa, >, True, True dinP, 288785, 289840, atg, tga, >, True, True yafN, 289892, 290185, atg, taa, >, True, True yafO, 290188, 290586, atg, tga, >, True, True yafP, 290596, 291048, atg, taa, >, True, True Z0296, 291355, 291621, atg, tga, >, True, True prfH, 291590, 292090, gtg, taa, >, True, True pepD, 292147, 293604, tgt, taa, <, False, True # Start codon reading frame match - shift 1: 293621, gtg: True gpt, 293865, 294323, cat, cta, >, False, False # Start codon reading frame match - shift 1: 293884, atg: True # Stop codon reading frame match - shift 1: 294340, taa: True # Matching shift 1 gpt, 293865, 294323, atg, taa, >, True, True yafA, 294415, 295659, atg, tta, >, True, False # Stop codon reading frame match - shift 1: 295677, taa: True crl, 295717, 296118, aat, gtg, >, False, False # Start codon reading frame match - shift 1: 295737, atg: True # Stop codon reading frame match - shift -7: 296128, taa: True # Stop codon reading frame match - shift 1: 296136, tga: True # Stop codon reading frame match - shift 5: 296140, tga: True phoE, 296157, 297212, tga, aat, <, False, False # Start codon reading frame match - shift 1: 297230, atg: True # Start codon reading frame match - shift 7: 297236, atg: True # Stop codon reading frame match - shift -2: 296174, tga: True # Stop codon reading frame match - shift 1: 296177, taa: True proB, 297500, 298603, cat, tta, >, False, False # Start codon reading frame match - shift 1: 297520, atg: True # Start codon reading frame match - shift 5: 297524, gtg: True # Stop codon reading frame match - shift -10: 298610, tga: True # Stop codon reading frame match - shift 1: 298621, taa: True proA, 298615, 299868, gat, gta, >, False, False # Start codon reading frame match - shift 1: 298635, atg: True # Stop codon reading frame match - shift 1: 299886, taa: True # Stop codon reading frame match - shift 5: 299890, taa: True thrW, 299983, 300058, ggc, acc, >, False, False # Stop codon reading frame match - shift 6: 300081, taa: True intH, 300073, 301047, tgc, aac, <, False, False # Start codon reading frame match - shift 1: 301065, atg: True # Start codon reading frame match - shift 5: 301069, atg: True # Stop codon reading frame match - shift -7: 300085, tga: True # Stop codon reading frame match - shift 1: 300093, taa: True # Stop codon reading frame match - shift 8: 300100, tga: True Z0308, 301423, 301812, tga, aaa, <, False, False # Start codon reading frame match - shift 1: 301830, atg: True # Stop codon reading frame match - shift 1: 301443, taa: True # Matching shift 1 Z0308, 301423, 301812, atg, taa, <, True, True Z0309, 301940, 302653, atg, tga, <, True, True Z0310, 303073, 303366, atg, tga, >, True, True Z0311, 303399, 304007, atg, tga, >, True, True Z0312, 303947, 304321, gtg, tga, >, True, True Z0313, 304318, 304629, atg, tga, >, True, True Z0314, 304629, 305339, atg, taa, >, True, True Z0315, 305351, 305803, gtg, tga, >, True, True Z0316, 305775, 306368, atg, tag, <, True, True Z0317, 306368, 306865, atg, taa, <, True, True pinH, 306856, 307446, atg, tga, >, True, True Z0319, 307504, 308277, atg, tga, <, True, True Z0321, 309101, 309844, atg, tga, >, True, True Z0322, 309886, 310251, gtg, taa, <, True, True Z0324, 310756, 311988, atg, taa, >, True, True Z0325, 311992, 312408, gtg, taa, >, True, True Z0326, 312381, 312998, atg, taa, >, True, True Z0327, 312998, 313456, atg, tga, >, True, True Z0328, 313449, 314081, atg, taa, >, True, True Z0330, 314112, 314702, ttg, taa, >, False, True # Start codon reading frame match - shift -8: 314124, atg: True Z0331, 314702, 315268, atg, taa, >, True, True Z0332, 315678, 315950, atg, tga, <, True, True psuI, 315956, 316507, atg, taa, <, True, True sidI, 316504, 317256, atg, tga, <, True, True Z0335, 317659, 317829, atg, taa, >, True, True Z0336, 318190, 318450, atg, tga, >, True, True Z0337, 318447, 319004, atg, tga, >, True, True Z0338, 319222, 319545, atg, taa, >, True, True Z0339, 319502, 321892, atg, taa, >, True, True Z0340, 322025, 322981, gtg, taa, <, True, True Z0341, 323074, 323112, atg, taa, <, True, True Z0342, 323657, 324556, atg, taa, <, True, True Z0343, 324655, 325377, atg, tga, >, True, True Z0344, 325544, 325822, atg, taa, >, True, True Z0345, 326097, 326246, atg, taa, >, True, True Z0346, 326525, 327409, atg, tga, <, True, True Z0347, 327673, 328731, atg, taa, >, True, True Z0348, 328807, 330000, atg, tag, >, True, True yagQ, 330179, 331135, atg, tga, <, True, True yagR, 331145, 333343, atg, taa, <, True, True yagS, 333340, 334296, atg, tga, <, True, True yagT, 334293, 334982, atg, tga, <, True, True yagU, 335400, 336014, atg, taa, >, True, True ykgJ, 336262, 336591, atg, taa, <, True, True yagV, 336904, 337659, atg, tga, <, True, True yagW, 337583, 339226, atg, taa, <, True, True yagX, 339216, 341741, atg, taa, <, True, True yagY, 341767, 342435, atg, tag, <, True, True yagZ, 342493, 343080, atg, taa, <, True, True ykgK, 343155, 343745, gtg, taa, <, True, True Z0362, 344151, 344375, atg, tga, <, True, True ykgL, 344522, 344713, atg, taa, >, True, True ykgM, 344923, 345186, atg, tga, <, True, True Z0365, 345429, 345830, gtg, tga, >, True, True Z0366, 345827, 346174, atg, taa, >, True, True Z0367, 346224, 347762, atg, taa, >, True, True Z0369, 348575, 349717, atg, taa, <, True, True Z0370, 349953, 350873, atg, taa, <, True, True Z0371, 350967, 351956, atg, tga, >, True, True Z0372, 352244, 352600, atg, taa, <, True, True Z0373, 352631, 352759, atg, tga, >, True, True Z0374, 352793, 353368, atg, taa, <, True, True eaeH, 353934, 358187, atg, taa, >, True, True ykgA, 358308, 359198, gtg, tag, <, True, True Z0377, 359399, 360283, atg, tga, >, True, True ykgB, 360443, 361036, atg, tga, <, True, True Z0379, 361019, 361288, gtg, taa, >, True, True ykgI, 361048, 361299, ttg, taa, <, False, True # Start codon reading frame match - shift -3: 361314, atg: True ykgC, 361393, 362745, atg, taa, <, True, True ykgD, 362944, 363798, atg, tga, >, True, True ykgE, 364325, 365044, gtg, tga, >, True, True ykgF, 365055, 366482, atg, taa, >, True, True ykgG, 366322, 367170, gtg, tga, >, True, True Z0387, 367125, 367337, atg, tga, <, True, True Z0388, 367665, 368081, atg, taa, <, True, True Z0389, 368263, 368505, gtg, taa, <, True, True Z0390, 368429, 369538, atg, tga, <, True, True Z0391, 369565, 370326, atg, taa, <, True, True Z0392, 370480, 370956, atg, tga, <, True, True Z0393, 371156, 371311, atg, tga, <, True, True Z0394, 371604, 371762, atg, taa, <, True, True Z0395, 371783, 372166, atg, tag, <, True, True Z0397, 372972, 373223, atg, tga, >, True, True betA, 373225, 374913, ttg, tga, <, False, True betB, 374927, 376399, atg, taa, <, True, True betI, 376413, 377000, atg, taa, <, True, True betT, 377129, 379162, atg, tga, >, True, True Z0402, 379670, 383719, atg, tga, >, True, True yahA, 383852, 384949, gtg, tga, >, True, True Z0404, 384991, 385251, gtg, taa, <, True, True Z0405, 385212, 385922, atg, tag, <, True, True Z0406, 386014, 386316, atg, taa, <, True, True yahD, 386779, 387384, atg, taa, >, True, True yahE, 387424, 388287, gtg, taa, >, True, True yahF, 388277, 389824, atg, tga, >, True, True yahG, 389824, 391242, atg, tga, >, True, True yahI, 391757, 392707, atg, taa, >, True, True yahJ, 392717, 394099, atg, tga, >, True, True Z0414, 394398, 394808, atg, tag, >, True, True Z0415, 395059, 396045, atg, taa, >, True, True Z0416, 396094, 396354, atg, tag, >, True, True Z0417, 396400, 397578, gtg, tga, >, True, True Z0418, 397571, 398542, atg, tga, >, True, True Z0419, 398539, 399495, atg, taa, >, True, True yahK, 399582, 400631, atg, tga, >, True, True yahL, 400874, 401689, atg, tag, >, True, True Z0422, 402035, 402115, ccg, cca, >, False, False Z0423, 402210, 402350, atg, tag, >, True, True yahN, 402367, 403038, atg, tga, <, True, True yahO, 403185, 403460, atg, taa, >, True, True prpR, 403558, 405144, atg, tga, <, True, True prpB, 405383, 406273, atg, taa, >, True, True prpC, 406429, 407598, atg, taa, >, True, True prpD, 407632, 409083, atg, taa, >, True, True prpE, 409123, 411009, atg, taa, >, True, True Z0431, 411372, 411509, tgc, agg, <, False, False # Start codon reading frame match - shift -4: 411523, gtg: True # Start codon reading frame match - shift 1: 411528, atg: True # Start codon reading frame match - shift 8: 411535, gtg: True # Stop codon reading frame match - shift -8: 411384, taa: True # Stop codon reading frame match - shift -5: 411387, tga: True # Stop codon reading frame match - shift 1: 411393, tag: True codB, 411903, 413162, cgt, ata, >, False, False # Start codon reading frame match - shift 1: 411924, gtg: True # Stop codon reading frame match - shift 1: 413181, taa: True # Matching shift 1 codB, 411903, 413162, gtg, taa, >, True, True codA, 413152, 414435, gtg, tga, >, True, True cynR, 414568, 415467, atg, taa, <, True, True cynT, 415577, 416236, gtg, taa, >, True, True cynS, 416267, 416737, atg, tga, >, True, True cynX, 416770, 417924, atg, tga, >, True, True lacA, 418027, 418638, atg, taa, <, True, True lacY, 418704, 419957, atg, taa, <, True, True lacZ, 420009, 423083, atg, taa, <, True, True lacI, 423206, 424288, acc, gag, <, False, False # Start codon reading frame match - shift 5: 424312, gtg: True # Start codon reading frame match - shift 7: 424314, atg: True # Stop codon reading frame match - shift 1: 423228, tga: True Z0442, 424325, 425278, ccc, gcg, <, False, False # Start codon reading frame match - shift 5: 425302, atg: True # Start codon reading frame match - shift 10: 425307, gtg: True # Stop codon reading frame match - shift 2: 424348, tag: True # Stop codon reading frame match - shift 5: 424351, tga: True Z0443, 425298, 426074, aat, cgg, <, False, False # Start codon reading frame match - shift 5: 426098, atg: True # Stop codon reading frame match - shift -6: 425313, taa: True # Stop codon reading frame match - shift 5: 425324, taa: True # Matching shift 5 Z0443, 425298, 426074, atg, taa, <, True, True mhpR, 426189, 427061, gtg, tag, <, True, True mhpA, 427213, 428877, atg, tga, >, True, True mhpB, 428879, 429823, atg, tga, >, True, True mhpC, 429778, 430707, gtg, taa, >, True, True mhpD, 430717, 431526, atg, tga, >, True, True mhpF, 431523, 432473, atg, tga, >, True, True mhpE, 432470, 433483, atg, taa, >, True, True mhpT, 433614, 434870, atg, tga, >, True, True yaiL, 434855, 435511, gtg, taa, >, True, True yaiM, 435636, 436469, atg, tga, <, True, True adhC, 436562, 437671, atg, tga, <, True, True yaiN, 437706, 438002, gtg, tag, <, True, True afuC, 438141, 439199, gga, taa, <, False, True # Start codon reading frame match - shift -10: 439213, atg: True # Start codon reading frame match - shift 2: 439225, atg: True afuB, 439199, 441277, gtc, atg, <, False, False # Start codon reading frame match - shift 2: 441303, atg: True # Stop codon reading frame match - shift 2: 439227, taa: True # Matching shift 2 afuB, 439199, 441277, atg, taa, <, True, True afuA, 441346, 442377, atg, taa, <, True, True Z0461, 442374, 443678, atg, tga, <, True, True Z0462, 443763, 445304, atg, taa, <, True, True Z0463, 445304, 445933, atg, taa, <, True, True tauA, 446236, 447198, atg, taa, >, True, True tauB, 447211, 447978, atg, tga, >, True, True tauC, 447975, 448802, atg, tga, >, True, True tauD, 448799, 449650, atg, taa, >, True, True hemB, 449757, 450764, tgc, taa, <, False, True # Start codon reading frame match - shift 1: 450791, gtg: True Z0469, 451257, 454199, aat, ggt, >, False, False # Start codon reading frame match - shift -6: 451279, atg: True # Start codon reading frame match - shift 1: 451286, atg: True # Stop codon reading frame match - shift 2: 454227, taa: True yaiV, 454242, 454910, taa, att, >, False, False # Start codon reading frame match - shift 2: 454272, atg: True # Stop codon reading frame match - shift 2: 454938, taa: True # Matching shift 2 yaiV, 454242, 454910, atg, taa, >, True, True yaiH, 454911, 456068, ttg, tga, <, False, True sbmA, 456420, 457640, atg, taa, >, True, True yaiW, 457653, 458747, atg, tga, >, True, True Z0475, 458806, 459114, atg, taa, <, True, True Z0476, 459242, 459586, gtg, taa, >, True, True Z0477, 459610, 460704, atg, taa, <, True, True yaiB, 461167, 461427, atg, taa, >, True, True phoA, 461459, 462943, ttg, taa, >, False, True psiF, 463044, 463382, atg, tga, >, True, True yaiC, 463484, 464599, atg, tga, >, True, True proC, 464616, 465425, atg, tga, <, True, True Z0483, 465425, 466003, ttg, taa, >, False, True aroL, 466186, 466710, atg, tga, >, True, True yaiA, 466760, 466951, atg, tga, >, True, True aroM, 467209, 467886, atg, taa, >, True, True yaiE, 467958, 468242, atg, taa, >, True, True Z0489, 470384, 470665, ttg, tga, >, False, True # Start codon reading frame match - shift -10: 470404, gtg: True # Start codon reading frame match - shift -5: 470409, gtg: True Z0491, 470662, 471111, atg, tag, >, True, True yaiD, 471196, 472107, atg, taa, <, True, True yajF, 472094, 473140, ttg, taa, >, False, True araJ, 473283, 474467, atg, tag, <, True, True sbcC, 474593, 477736, atg, taa, <, True, True sbcD, 477733, 478935, atg, tga, <, True, True phoB, 479125, 479814, atg, taa, >, True, True phoR, 479872, 481167, gtg, taa, >, True, True brnQ, 481574, 482893, atg, taa, >, True, True proY, 482969, 484342, atg, taa, >, True, True malZ, 484498, 486315, atg, aac, >, True, False # Stop codon reading frame match - shift -2: 486341, tga: True # Stop codon reading frame match - shift 3: 486346, taa: True Z0502, 486503, 487948, gat, aaa, >, False, False # Start codon reading frame match - shift -10: 486523, gtg: True # Start codon reading frame match - shift 3: 486536, atg: True # Stop codon reading frame match - shift -4: 487972, taa: True # Stop codon reading frame match - shift 3: 487979, tag: True # Stop codon reading frame match - shift 6: 487982, tga: True yajB, 487969, 488550, aat, aac, <, False, False # Start codon reading frame match - shift 3: 488581, atg: True # Stop codon reading frame match - shift 3: 488002, tga: True # Matching shift 3 yajB, 487969, 488550, atg, tga, <, True, True queA, 488643, 489713, atg, taa, >, True, True tgt, 489768, 490895, atg, taa, >, True, True yajC, 490918, 491250, atg, taa, >, True, True secD, 491278, 493125, gtg, tga, >, True, True secF, 493136, 494107, gtg, taa, >, True, True Z0509, 494258, 494500, atg, taa, >, True, True Z0510, 494493, 494774, gtg, taa, >, True, True yajD, 494862, 495209, atg, tga, >, True, True tsx, 495386, 496270, tga, tga, <, False, True # Start codon reading frame match - shift 1: 496302, atg: True yajI, 496569, 497168, tgc, aaa, <, False, False # Start codon reading frame match - shift 1: 497200, atg: True # Stop codon reading frame match - shift -7: 496595, tag: True # Stop codon reading frame match - shift 1: 496603, taa: True # Matching shift 1 yajI, 496569, 497168, atg, taa, <, True, True ybaD, 497259, 497708, atg, taa, >, True, True ribD, 497712, 498815, gtg, tga, >, True, True Z0516, 498904, 499374, atg, tga, >, True, True nusB, 499394, 499813, gtg, taa, >, True, True thiL, 499891, 500868, atg, taa, >, True, True pgpA, 500846, 501361, atg, taa, >, True, True Z0521, 501539, 503110, atg, tga, <, True, True yajO, 503341, 504315, atg, taa, <, True, True dxs, 504370, 506232, atg, taa, <, True, True ispA, 506257, 507156, atg, taa, <, True, True xseB, 507156, 507398, atg, taa, <, True, True yajK, 507604, 509052, atg, taa, >, True, True thiJ, 509106, 509702, gtg, tag, <, True, True apbA, 509659, 510570, atg, tag, <, True, True yajQ, 510720, 511229, atg, taa, >, True, True yajR, 511357, 512727, gtg, taa, <, True, True cyoE, 512870, 513760, atg, taa, <, True, True cyoD, 513772, 514101, atg, taa, <, True, True cyoC, 514101, 514715, atg, taa, <, True, True cyoB, 514705, 516696, atg, tga, <, True, True cyoA, 516718, 517665, atg, taa, <, True, True ampG, 518125, 519600, atg, taa, <, True, True yajG, 519644, 520324, atg, taa, <, True, True bolA, 520494, 520844, atg, taa, >, True, True tig, 521188, 522486, atg, taa, >, True, True clpP, 522731, 523354, atg, tga, >, True, True clpX, 523480, 524754, atg, taa, >, True, True lon, 524897, 527296, gtg, tag, >, True, True hupB, 527505, 527777, gtg, taa, >, True, True ybaU, 527969, 529840, atg, taa, >, True, True ybaV, 529992, 530363, atg, taa, >, True, True ybaW, 530469, 530867, atg, taa, >, True, True ybaX, 530919, 531614, atg, taa, <, True, True ybaE, 531679, 533379, atg, tga, <, True, True cof, 533467, 534297, gtg, taa, >, True, True ybaO, 534449, 534907, atg, taa, >, True, True mdlA, 534937, 536709, gtg, tag, >, True, True mdlB, 536702, 538483, atg, tga, >, True, True glnK, 538664, 539002, atg, taa, >, True, True amtB, 539032, 540318, atg, ata, >, True, False # Stop codon reading frame match - shift -6: 540344, taa: True # Stop codon reading frame match - shift 1: 540351, taa: True tesB, 540367, 541227, tga, aaa, <, False, False # Start codon reading frame match - shift 1: 541260, atg: True # Stop codon reading frame match - shift -7: 540394, tag: True # Stop codon reading frame match - shift 1: 540402, taa: True # Matching shift 1 tesB, 540367, 541227, atg, taa, <, True, True ybaY, 541445, 542017, atg, taa, >, True, True ybaZ, 542050, 542421, atg, taa, <, True, True ffs, 542492, 542629, gcg, ccc, >, False, False # Start codon reading frame match - shift -10: 542517, atg: True ybaA, 542740, 543093, atg, tag, >, True, True ylaB, 543135, 544691, atg, tga, <, True, True ylaC, 544849, 545358, gtg, taa, <, True, True ylaD, 545435, 545986, atg, taa, <, True, True hha, 546158, 546376, atg, taa, <, True, True ybaJ, 546402, 546776, atg, tag, <, True, True acrB, 547322, 550471, atg, tga, <, True, True acrA, 550494, 551687, atg, taa, <, True, True acrR, 551829, 552476, atg, taa, >, True, True aefA, 552604, 555966, atg, taa, >, True, True Z0583, 556005, 556169, atg, taa, <, True, True priC, 556183, 556710, tga, tag, <, False, True # Start codon reading frame match - shift 1: 556744, gtg: True ybaN, 556780, 557157, tat, ctg, >, False, False # Start codon reading frame match - shift 1: 556816, atg: True # Stop codon reading frame match - shift 1: 557191, tga: True # Matching shift 1 ybaN, 556780, 557157, atg, tga, >, True, True apt, 557310, 557861, atg, taa, >, True, True dnaX, 557990, 559921, atg, tga, >, True, True ybaB, 559974, 560303, atg, tga, >, True, True recR, 560303, 560908, atg, taa, >, True, True htpG, 561018, 562892, atg, cct, >, True, False # Stop codon reading frame match - shift 2: 562928, tga: True # Stop codon reading frame match - shift 7: 562933, taa: True adk, 563073, 563717, caa, gct, >, False, False # Start codon reading frame match - shift 2: 563111, atg: True # Stop codon reading frame match - shift 2: 563753, taa: True # Matching shift 2 adk, 563073, 563717, atg, taa, >, True, True hemH, 563849, 564811, atg, taa, >, True, True ybaC, 564808, 565767, atg, tag, <, True, True gsk, 565919, 567223, atg, taa, >, True, True ybaL, 567356, 569032, atg, taa, <, True, True fsr, 569269, 570489, tgg, gat, <, False, False # Start codon reading frame match - shift -9: 570516, gtg: True # Start codon reading frame match - shift -5: 570520, atg: True # Start codon reading frame match - shift 1: 570526, atg: True # Stop codon reading frame match - shift 1: 569308, tga: True # Stop codon reading frame match - shift 8: 569315, taa: True ushA, 570707, 572359, tat, gta, >, False, False # Start codon reading frame match - shift 1: 570746, atg: True # Stop codon reading frame match - shift -10: 572385, tga: True # Stop codon reading frame match - shift 1: 572396, taa: True # Matching shift 1 ushA, 570707, 572359, atg, taa, >, True, True ybaK, 572396, 572875, atg, taa, <, True, True ybaP, 573079, 573873, atg, taa, <, True, True ybaQ, 573957, 574352, atg, taa, >, True, True ybaR, 574567, 577071, atg, taa, <, True, True ybaS, 577333, 578265, atg, tga, >, True, True ybaT, 578268, 579560, atg, taa, >, True, True Z0608, 579898, 581253, atg, taa, >, True, True Z0609, 581356, 585741, atg, tta, >, True, False # Stop codon reading frame match - shift 1: 585779, tag: True Z0615, 585949, 601515, ggt, tga, >, False, True # Start codon reading frame match - shift 1: 585989, gtg: True Z0634, 601519, 603681, tgg, ggt, >, False, False # Start codon reading frame match - shift -4: 601554, atg: True # Start codon reading frame match - shift -1: 601557, gtg: True # Start codon reading frame match - shift 2: 601560, gtg: True # Stop codon reading frame match - shift -5: 603713, taa: True Z0635, 603678, 604853, ggg, tgc, >, False, False ybbI, 604925, 605257, aga, atc, >, False, False # Start codon reading frame match - shift -6: 604958, atg: True Z0638, 605461, 605883, ctc, agg, <, False, False # Start codon reading frame match - shift 8: 605928, atg: True Z0639, 605968, 606984, aaa, tcc, <, False, False # Stop codon reading frame match - shift -9: 605998, taa: True Z0640, 607351, 607713, gga, gcc, >, False, False # Stop codon reading frame match - shift -9: 607741, tga: True # Stop codon reading frame match - shift -5: 607745, taa: True ybbJ, 607892, 608350, aat, tga, <, False, True # Start codon reading frame match - shift 8: 608395, atg: True ybbK, 608347, 609264, tat, ata, <, False, False # Stop codon reading frame match - shift -1: 608385, tag: True # Stop codon reading frame match - shift 2: 608388, taa: True ybbL, 609410, 610087, agg, atg, >, False, False # Stop codon reading frame match - shift 1: 610125, tga: True ybbM, 610047, 610853, act, tga, >, False, True # Start codon reading frame match - shift -8: 610078, gtg: True ybbN, 610916, 611806, aat, tga, <, False, True ybbO, 611831, 612640, agc, gcg, <, False, False # Stop codon reading frame match - shift -7: 611863, taa: True # Stop codon reading frame match - shift 6: 611876, tga: True tesA, 612630, 613256, caa, aga, <, False, False # Start codon reading frame match - shift -5: 613288, atg: True # Start codon reading frame match - shift 8: 613301, atg: True # Stop codon reading frame match - shift -6: 612663, tga: True ybbA, 613224, 613910, agg, agg, >, False, False ybbP, 613907, 616321, cag, agt, >, False, False Z0651, 616751, 620947, ggg, gct, >, False, False ybbD, 620928, 621188, ggc, tta, >, False, False Z0654, 621227, 621376, aaa, gca, >, False, False # Stop codon reading frame match - shift -9: 621404, taa: True